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Aliases for PIR59540 Gene

Subcategory (RNA class) for PIR59540 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR59540 Gene

No Aliases found

ORGUL Members for PIR59540 Gene

No data available for External Ids for PIR59540 Gene

Summaries for PIR59540 Gene

GeneCards Summary for PIR59540 Gene

PIR59540 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR59540 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR59540 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR59540 Gene

Genomics for PIR59540 Gene

GeneHancer (GH) Regulatory Elements for PIR59540 Gene

Promoters and enhancers for PIR59540 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J053142 Enhancer 0.8 Ensembl dbSUPER 650.7 -0.9 -948 1 ZNF687 HLF EBF1 DPF2 ZIC2 POLR2A IKZF1 EED MLLT1 RUNX3 PIR59540 RFT1
GH03J053140 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.1 -3148 1.4 HDGF ZSCAN26 ZSCAN4 ZNF133 MAX PAX8 SALL2 EBF1 ZFHX2 FOXK2 GLT8D1 RFT1 NISCH PRKCD ACTR8 NEK4 STIMATE ITIH4 DCP1A ITIH3
GH03J053129 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -13.6 -13571 3 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 YY1 POLR2B RFT1 SFMBT1 PIR59540
GH03J053144 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +2.1 2127 3.2 NCOA3 PKNOX1 CLOCK FOXA2 ARNT EBF1 ZIC2 ZNF664 CTBP1 GATA3 SNORD38C STIMATE TMEM110-MUSTN1 ENSG00000243696 MUSTN1 PRKCD PIR59540
GH03J053134 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -9.4 -9448 0.4 RB1 ARID4B RAD21 ZNF335 ZNF143 BCLAF1 THAP11 DEK SMARCA5 ZNF654 PRKCD RFT1 PIR59540
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR59540 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR59540 Gene

Genomic Locations for PIR59540 Gene
chr3:53,144,249-53,144,275
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr3:53,178,265-53,178,291
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR59540 Gene

Genes around PIR59540 on UCSC Golden Path with GeneCards custom track

PIR59540 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR59540 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR59540 Gene

Function for PIR59540 Gene

Phenotypes From GWAS Catalog for PIR59540 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR59540 Gene

Localization for PIR59540 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR59540 Gene

Pathways & Interactions for PIR59540 Gene

SuperPathways for PIR59540 Gene

No Data Available

Interacting Proteins for PIR59540 Gene

Gene Ontology (GO) - Biological Process for PIR59540 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR59540 Gene

Drugs & Compounds for PIR59540 Gene

No Compound Related Data Available

Transcripts for PIR59540 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR59540 Gene

No ASD Table

Relevant External Links for PIR59540 Gene

GeneLoc Exon Structure for
PIR59540

No data available for mRNA/cDNA for PIR59540 Gene

Expression for PIR59540 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR59540 Gene

Orthologs for PIR59540 Gene

No data available for Orthologs and Evolution for PIR59540 Gene

Paralogs for PIR59540 Gene

No data available for Paralogs for PIR59540 Gene

Variants for PIR59540 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR59540 Gene

Disorders for PIR59540 Gene

No disorders were found for PIR59540 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR59540 Gene

Publications for PIR59540 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR59540 Gene

Sources for PIR59540 Gene

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