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Aliases for PIR59488 Gene

Subcategory (RNA class) for PIR59488 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR59488 Gene

No Aliases found

ORGUL Members for PIR59488 Gene

No data available for External Ids for PIR59488 Gene

Summaries for PIR59488 Gene

GeneCards Summary for PIR59488 Gene

PIR59488 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR59488 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR59488 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR59488 Gene

Genomics for PIR59488 Gene

GeneHancer (GH) Regulatory Elements for PIR59488 Gene

Promoters and enhancers for PIR59488 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J007082 Enhancer 0.9 ENCODE 650.7 +0.8 770 0 HDAC1 PKNOX1 RB1 ARID4B SIN3A ZBTB40 RAD21 TCF12 GATA2 ZNF143 PIR59488 MRFAP1L1 BLOC1S4 KIAA0232 LINC02482 LOC93622 LOC105374370
GH04J007070 Enhancer 0.9 ENCODE 0.4 +12.0 11990 0.2 ELF3 RB1 ARID4B SIN3A IRF4 THRB RAD21 ZEB1 YY1 SCRT2 LOC105374370 PIR59488
GH04J007073 Enhancer 0.8 ENCODE 0.4 +9.1 9149 0.1 ARNT ETS1 ZNF766 ZNF143 FOS CREM THAP11 SP3 NFYA HCFC1 LOC105374370 PIR59488
GH04J007074 Enhancer 0.8 ENCODE 0.4 +8.4 8427 1.3 ARNT ETS1 ZNF766 ZNF143 FOS CREM THAP11 SP3 NFYA HCFC1 GRPEL1 LOC105374370 PIR59488
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR59488 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR59488 Gene

Genomic Locations for PIR59488 Gene
chr4:7,082,902-7,082,929
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr4:7,084,629-7,084,656
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR59488 Gene

Genes around PIR59488 on UCSC Golden Path with GeneCards custom track

PIR59488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR59488 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR59488 Gene

Function for PIR59488 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR59488 Gene

Localization for PIR59488 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR59488 Gene

Pathways & Interactions for PIR59488 Gene

SuperPathways for PIR59488 Gene

No Data Available

Interacting Proteins for PIR59488 Gene

Gene Ontology (GO) - Biological Process for PIR59488 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR59488 Gene

Drugs & Compounds for PIR59488 Gene

No Compound Related Data Available

Transcripts for PIR59488 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR59488 Gene

No ASD Table

Relevant External Links for PIR59488 Gene

GeneLoc Exon Structure for
PIR59488

No data available for mRNA/cDNA for PIR59488 Gene

Expression for PIR59488 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR59488 Gene

Orthologs for PIR59488 Gene

No data available for Orthologs and Evolution for PIR59488 Gene

Paralogs for PIR59488 Gene

No data available for Paralogs for PIR59488 Gene

Variants for PIR59488 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR59488 Gene

Disorders for PIR59488 Gene

No disorders were found for PIR59488 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR59488 Gene

Publications for PIR59488 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR59488 Gene

Sources for PIR59488 Gene

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