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Aliases for PIR59278 Gene

Subcategory (RNA class) for PIR59278 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR59278 Gene

No Aliases found

Previous GeneCards Identifiers for PIR59278 Gene

  • GC17M075160
  • GC12M127656
  • GC12M127660

No data available for External Ids for PIR59278 Gene

Summaries for PIR59278 Gene

GeneCards Summary for PIR59278 Gene

PIR59278 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR59278 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR59278

Additional gene information for PIR59278 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR59278 Gene

Genomics for PIR59278 Gene

GeneHancer (GH) Regulatory Elements for PIR59278 Gene

Promoters and enhancers for PIR59278 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J127165 Enhancer 0.6 ENCODE dbSUPER 650.7 +0.4 442 1.2 ZBTB33 TAF7 PIR55851 PIR59278
GH12J127177 Enhancer 0.7 dbSUPER 0.4 -12.8 -12788 4.4 LEF1 TAL1 ZNF280A CBX5 CBFA2T2 NFE2 TRIM24 CBFA2T3 MAFG CEBPB LINC02405 PIR59278 LINC02376
GH12J127230 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -64.8 -64800 2.5 MAFG CBFA2T3 FOSL1 ZNF316 JUND EGR1 TRIM24 MAFK EMSY LINC02376 PIR59278
GH12J127170 Enhancer 0.3 ENCODE 0.7 -4.2 -4234 0.2 SPI1 PIR59278 LINC02376
GH12J127257 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.2 -91.5 -91511 0.7 MITF PKNOX1 USF1 NFYB LINC02376 PIR59278
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR59278 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR59278 Gene

Genomic Locations for PIR59278 Gene
chr12:127,166,399-127,166,437
(GRCh38/hg38)
Size:
39 bases
Orientation:
Minus strand
chr12:127,650,944-127,650,982
(GRCh37/hg19)
Size:
39 bases
Orientation:
Minus strand

Genomic View for PIR59278 Gene

Genes around PIR59278 on UCSC Golden Path with GeneCards custom track

PIR59278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR59278 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR59278 Gene

ORGUL Member Location for PIR59278 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR59278 Gene

Function for PIR59278 Gene

Phenotypes From GWAS Catalog for PIR59278 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR59278 Gene

Localization for PIR59278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR59278 Gene

Pathways & Interactions for PIR59278 Gene

SuperPathways for PIR59278 Gene

No Data Available

Interacting Proteins for PIR59278 Gene

Gene Ontology (GO) - Biological Process for PIR59278 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR59278 Gene

Drugs & Compounds for PIR59278 Gene

No Compound Related Data Available

Transcripts for PIR59278 Gene

fRNAdb Secondary structures for PIR59278 Gene

  • FR387950
  • FR259053
  • FR240375

Alternative Splicing Database (ASD) splice patterns (SP) for PIR59278 Gene

No ASD Table

Relevant External Links for PIR59278 Gene

GeneLoc Exon Structure for
PIR59278

No data available for mRNA/cDNA for PIR59278 Gene

Expression for PIR59278 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR59278 Gene

Orthologs for PIR59278 Gene

No data available for Orthologs and Evolution for PIR59278 Gene

Paralogs for PIR59278 Gene

No data available for Paralogs for PIR59278 Gene

Variants for PIR59278 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR59278 Gene

Disorders for PIR59278 Gene

No disorders were found for PIR59278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR59278 Gene

Publications for PIR59278 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR59278 Gene

Sources for PIR59278 Gene

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