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Aliases for PIR58965 Gene

Subcategory (RNA class) for PIR58965 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR58965 Gene

No Aliases found

ORGUL Members for PIR58965 Gene

Previous GeneCards Identifiers for PIR58965 Gene

  • GC06M170581

No data available for External Ids for PIR58965 Gene

Summaries for PIR58965 Gene

GeneCards Summary for PIR58965 Gene

PIR58965 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58965 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58965 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58965 Gene

Genomics for PIR58965 Gene

GeneHancer (GH) Regulatory Elements for PIR58965 Gene

Promoters and enhancers for PIR58965 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I170271 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.1 143 1.6 MAX EBF1 POLR2A ATF7 ETV6 BCLAF1 IKZF2 RUNX3 SMARCA5 CBFB LINC01624 PIR58965 LOC285804 FAM120B LOC154449
GH06I170273 Enhancer 0.2 dbSUPER 550.8 -1.6 -1580 1.1 PIR58965 LINC01624 LOC285804
GH06I170268 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.8 +2.8 2843 2.3 SCRT2 ZIC2 LOC285804 PIR58965 LOC154449
GH06I170265 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +6.3 6299 1.6 CTCF TFAP4 FOXA2 PKNOX1 SAP130 ARID4B MAX RAD21 YY1 ZNF687 LOC285804 ENSG00000261003 LOC154449 PIR58965
GH06I170267 Enhancer 0.3 dbSUPER 0.8 +4.5 4484 0.3 MNT LOC285804 PIR58965 LOC154449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58965 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58965 Gene

Genomic Locations for PIR58965 Gene
chr6:170,272,302-170,272,328
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr6:170,581,390-170,581,416
(GRCh37/hg19)

Genomic View for PIR58965 Gene

Genes around PIR58965 on UCSC Golden Path with GeneCards custom track

PIR58965 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58965 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58965 Gene

Proteins for PIR58965 Gene

Post-translational modifications for PIR58965 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58965 Gene

Domains & Families for PIR58965 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58965 Gene

Function for PIR58965 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58965 Gene

Localization for PIR58965 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58965 Gene

Pathways & Interactions for PIR58965 Gene

SuperPathways for PIR58965 Gene

No Data Available

Interacting Proteins for PIR58965 Gene

Gene Ontology (GO) - Biological Process for PIR58965 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58965 Gene

Drugs & Compounds for PIR58965 Gene

No Compound Related Data Available

Transcripts for PIR58965 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58965 Gene

No ASD Table

Relevant External Links for PIR58965 Gene

GeneLoc Exon Structure for
PIR58965

No data available for mRNA/cDNA for PIR58965 Gene

Expression for PIR58965 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58965 Gene

Orthologs for PIR58965 Gene

No data available for Orthologs and Evolution for PIR58965 Gene

Paralogs for PIR58965 Gene

No data available for Paralogs for PIR58965 Gene

Variants for PIR58965 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58965 Gene

Disorders for PIR58965 Gene

No disorders were found for PIR58965 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58965 Gene

Publications for PIR58965 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58965 Gene

Sources for PIR58965 Gene

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