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Aliases for PIR58953 Gene

Subcategory (RNA class) for PIR58953 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR58953 Gene

No Aliases found

ORGUL Members for PIR58953 Gene

Previous GeneCards Identifiers for PIR58953 Gene

  • GC09M043070
  • GC09M043071
  • GC09M043081

No data available for External Ids for PIR58953 Gene

Summaries for PIR58953 Gene

GeneCards Summary for PIR58953 Gene

PIR58953 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58953 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58953 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58953 Gene

Genomics for PIR58953 Gene

GeneHancer (GH) Regulatory Elements for PIR58953 Gene

Promoters and enhancers for PIR58953 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I083510 Enhancer 0.9 Ensembl ENCODE 550.8 +0.9 882 1.2 PKNOX1 JUN JUNB DPF2 BATF ATF2 IRF4 ZNF217 JUND BCL11A GC09M083513 PIR58953 FRMD3 GC09M083455
GH09I083512 Enhancer 0.2 dbSUPER 550.8 -0.7 -730 1 GC09M083513 PIR58953 FRMD3
GH09I083537 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.3 -26.2 -26227 1.7 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 GLIS2 SP3 SP5 MXD4 FRMD3 GC09M083513 PIR58953
GH09I083508 Enhancer 0.6 FANTOM5 ENCODE dbSUPER 0.8 +4.0 4020 0.2 KIF27 HNRNPK UBQLN1 GC09M083513 PIR58953 FRMD3 GC09M083455
GH09I083527 Enhancer 0.9 ENCODE dbSUPER 0.4 -14.8 -14840 0.2 SOX13 TFAP4 FOXA2 SAP130 ARID4B CEBPG ZNF644 TEAD3 HOMEZ THAP11 FRMD3 PIR58953 GC09M083513
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58953 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58953 Gene

Genomic Locations for PIR58953 Gene
chr9:83,512,211-83,512,241
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr9:43,063,563-43,063,593
(GRCh37/hg19)

Genomic View for PIR58953 Gene

Genes around PIR58953 on UCSC Golden Path with GeneCards custom track

PIR58953 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58953 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58953 Gene

Proteins for PIR58953 Gene

Post-translational modifications for PIR58953 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58953 Gene

Domains & Families for PIR58953 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58953 Gene

Function for PIR58953 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58953 Gene

Localization for PIR58953 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58953 Gene

Pathways & Interactions for PIR58953 Gene

SuperPathways for PIR58953 Gene

No Data Available

Interacting Proteins for PIR58953 Gene

Gene Ontology (GO) - Biological Process for PIR58953 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58953 Gene

Drugs & Compounds for PIR58953 Gene

No Compound Related Data Available

Transcripts for PIR58953 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58953 Gene

No ASD Table

Relevant External Links for PIR58953 Gene

GeneLoc Exon Structure for
PIR58953

No data available for mRNA/cDNA for PIR58953 Gene

Expression for PIR58953 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58953 Gene

Orthologs for PIR58953 Gene

No data available for Orthologs and Evolution for PIR58953 Gene

Paralogs for PIR58953 Gene

No data available for Paralogs for PIR58953 Gene

Variants for PIR58953 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58953 Gene

Disorders for PIR58953 Gene

No disorders were found for PIR58953 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58953 Gene

Publications for PIR58953 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58953 Gene

Sources for PIR58953 Gene

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