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Aliases for PIR58938 Gene

Subcategory (RNA class) for PIR58938 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58938 Gene

No Aliases found

ORGUL Members for PIR58938 Gene

No data available for External Ids for PIR58938 Gene

Summaries for PIR58938 Gene

GeneCards Summary for PIR58938 Gene

PIR58938 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58938 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58938 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58938 Gene

Genomics for PIR58938 Gene

GeneHancer (GH) Regulatory Elements for PIR58938 Gene

Promoters and enhancers for PIR58938 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J013597 Enhancer 0.7 dbSUPER 650.7 -0.4 -426 8.6 SOX13 CTCF PKNOX1 FOXA2 ZNF792 SAP130 CEBPG BATF RARA GATA3 PIR58938 BOD1L1 LOC100288683 LINC01096 GC04P013564
GH04J013625 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 -26.3 -26296 3.1 HDGF FOXA2 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 BOD1L1 MIR5091 LINC01096 LOC101929048 PIR58938
GH04J013610 Enhancer 0.8 ENCODE dbSUPER 0.4 -10.8 -10769 2.2 SRF ZNF687 NR2F1 BACH1 JUNB ATF2 RELA BCL11A POLR2A RUNX3 LOC100288683 LINC01096 PIR58938 BOD1L1
GH04J013615 Enhancer 0.8 Ensembl dbSUPER 0.4 -14.4 -14350 0.4 BATF GABPA POLR2A ETV6 IKZF2 RUNX3 BCLAF1 MYC SPI1 BOD1L1 PIR58938
GH04J013619 Enhancer 0.4 dbSUPER 0.3 -21.0 -20976 4.5 ATF4 FOXA2 BOD1L1 LINC01096 PIR58938
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58938 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58938 Gene

Genomic Locations for PIR58938 Gene
chr4:13,601,017-13,601,045
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr4:13,602,641-13,602,669
(GRCh37/hg19)
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR58938 Gene

Genes around PIR58938 on UCSC Golden Path with GeneCards custom track

PIR58938 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58938 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58938 Gene

Function for PIR58938 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58938 Gene

Localization for PIR58938 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58938 Gene

Pathways & Interactions for PIR58938 Gene

SuperPathways for PIR58938 Gene

No Data Available

Interacting Proteins for PIR58938 Gene

Gene Ontology (GO) - Biological Process for PIR58938 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58938 Gene

Drugs & Compounds for PIR58938 Gene

No Compound Related Data Available

Transcripts for PIR58938 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58938 Gene

No ASD Table

Relevant External Links for PIR58938 Gene

GeneLoc Exon Structure for
PIR58938

No data available for mRNA/cDNA for PIR58938 Gene

Expression for PIR58938 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58938 Gene

Orthologs for PIR58938 Gene

No data available for Orthologs and Evolution for PIR58938 Gene

Paralogs for PIR58938 Gene

No data available for Paralogs for PIR58938 Gene

Variants for PIR58938 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58938 Gene

Disorders for PIR58938 Gene

No disorders were found for PIR58938 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58938 Gene

Publications for PIR58938 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58938 Gene

Sources for PIR58938 Gene

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