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Aliases for PIR58933 Gene

Subcategory (RNA class) for PIR58933 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR58933 Gene

No Aliases found

ORGUL Members for PIR58933 Gene

Previous GeneCards Identifiers for PIR58933 Gene

  • GC15M101104
  • GC15M100587
  • GC15M100592
  • GC15M100598
  • GC15M100604
  • GC15M100610
  • GC15M100668
  • GC15M100659

No data available for External Ids for PIR58933 Gene

Summaries for PIR58933 Gene

GeneCards Summary for PIR58933 Gene

PIR58933 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58933 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58933 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58933 Gene

Genomics for PIR58933 Gene

GeneHancer (GH) Regulatory Elements for PIR58933 Gene

Promoters and enhancers for PIR58933 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I100600 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 -37.7 -37665 3.8 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF213 ZNF143 ZNF207 LINS1 ASB7 ENSG00000270127 PRKXP1 PIR58933
GH15I100562 Enhancer 0.5 FANTOM5 dbSUPER 0.8 +2.4 2367 0.2 PRDM10 GC15M100693 RNU6-181P PIR58933 LINS1
GH15I100594 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -32.8 -32828 4.7 PKNOX1 ATF1 ARNT IRF4 TCF12 E2F8 ATF7 RUNX3 JUNB NCOA1 ENSG00000270127 PRKXP1 LINS1 ASB7 PIR58933
GH15I100569 Enhancer 0.6 dbSUPER 0.4 -7.4 -7357 5.6 CTCF USF1 HLF NFYC USF2 EBF1 RAD21 ATF2 RFX5 MITF ENSG00000270127 LINS1 CERS3 PRKXP1 ASB7 PIR58933
GH15I100580 Enhancer 0.4 ENCODE dbSUPER 0.4 -16.4 -16375 0.6 ENSG00000270127 PIR58933 ASB7 LINS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58933 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58933 Gene

Genomic Locations for PIR58933 Gene
chr15:100,564,457-100,564,483
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr15:101,104,662-101,104,688
(GRCh37/hg19)

Genomic View for PIR58933 Gene

Genes around PIR58933 on UCSC Golden Path with GeneCards custom track

PIR58933 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58933 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58933 Gene

Proteins for PIR58933 Gene

Post-translational modifications for PIR58933 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58933 Gene

Domains & Families for PIR58933 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58933 Gene

Function for PIR58933 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58933 Gene

Localization for PIR58933 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58933 Gene

Pathways & Interactions for PIR58933 Gene

SuperPathways for PIR58933 Gene

No Data Available

Interacting Proteins for PIR58933 Gene

Gene Ontology (GO) - Biological Process for PIR58933 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58933 Gene

Drugs & Compounds for PIR58933 Gene

No Compound Related Data Available

Transcripts for PIR58933 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58933 Gene

No ASD Table

Relevant External Links for PIR58933 Gene

GeneLoc Exon Structure for
PIR58933

No data available for mRNA/cDNA for PIR58933 Gene

Expression for PIR58933 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58933 Gene

Orthologs for PIR58933 Gene

No data available for Orthologs and Evolution for PIR58933 Gene

Paralogs for PIR58933 Gene

No data available for Paralogs for PIR58933 Gene

Variants for PIR58933 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58933 Gene

Disorders for PIR58933 Gene

No disorders were found for PIR58933 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58933 Gene

Publications for PIR58933 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58933 Gene

Sources for PIR58933 Gene

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