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Aliases for PIR58900 Gene

Subcategory (RNA class) for PIR58900 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR58900 Gene

No Aliases found

Previous GeneCards Identifiers for PIR58900 Gene

  • GC20P002702
  • GC20P002714
  • GC20P002727
  • GC20P002742
  • GC20P002763
  • GC20P002776
  • GC20P002787
  • GC20P002823
  • GC20P002828
  • GC20P002843
  • GC20P002856

No data available for External Ids for PIR58900 Gene

Summaries for PIR58900 Gene

GeneCards Summary for PIR58900 Gene

PIR58900 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58900 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR58900

Additional gene information for PIR58900 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58900 Gene

Genomics for PIR58900 Gene

GeneHancer (GH) Regulatory Elements for PIR58900 Gene

Promoters and enhancers for PIR58900 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I002659 Enhancer 0.7 ENCODE 550.8 +1.6 1642 0 KLF17 CDC5L CHD7 KMT2B ZNF335 POLR2B GLIS2 E2F8 POLR2A PATZ1 GC20P002879 GC20P002882 GC20P002883 GC20P002884 GC20P002885 PIR58900 SNORD56 SNORD57 IDH3B GC20P002890
GH20I002656 Enhancer 0.5 ENCODE 550.8 -0.9 -948 0.2 PAF1 HIC1 POLR2A ZNF837 GC20P002878 GC20P002881 GC20P002882 GC20P002883 GC20P002884 GC20P002885 GC20P002887 GC20P002888 PIR58104 PIR58900
GH20I002655 Enhancer 0.4 ENCODE 550.8 -1.5 -1532 0.2 SSRP1 POLR2A GC20P002878 GC20P002880 GC20P002882 GC20P002883 GC20P002884 GC20P002885 GC20P002887 GC20P002888 PIR58104 PIR58900
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58900 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58900 Gene

Genomic Locations for PIR58900 Gene
chr20:2,656,938-2,657,010
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr20:2,637,584-2,637,656
(GRCh37/hg19)

Genomic View for PIR58900 Gene

Genes around PIR58900 on UCSC Golden Path with GeneCards custom track

PIR58900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR58900 Gene

ORGUL Member Location for PIR58900 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58900 Gene

Proteins for PIR58900 Gene

Post-translational modifications for PIR58900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58900 Gene

Domains & Families for PIR58900 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58900 Gene

Function for PIR58900 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58900 Gene

Localization for PIR58900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58900 Gene

Pathways & Interactions for PIR58900 Gene

SuperPathways for PIR58900 Gene

No Data Available

Interacting Proteins for PIR58900 Gene

Gene Ontology (GO) - Biological Process for PIR58900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58900 Gene

Drugs & Compounds for PIR58900 Gene

No Compound Related Data Available

Transcripts for PIR58900 Gene

fRNAdb Secondary structures for PIR58900 Gene

  • FR004416
  • FR270731

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58900 Gene

No ASD Table

Relevant External Links for PIR58900 Gene

GeneLoc Exon Structure for
PIR58900

No data available for mRNA/cDNA for PIR58900 Gene

Expression for PIR58900 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58900 Gene

Orthologs for PIR58900 Gene

No data available for Orthologs and Evolution for PIR58900 Gene

Paralogs for PIR58900 Gene

No data available for Paralogs for PIR58900 Gene

Variants for PIR58900 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58900 Gene

Disorders for PIR58900 Gene

No disorders were found for PIR58900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58900 Gene

Publications for PIR58900 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58900 Gene

Sources for PIR58900 Gene

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