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Aliases for PIR58897 Gene

Subcategory (RNA class) for PIR58897 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58897 Gene

No Aliases found

ORGUL Members for PIR58897 Gene

Previous GeneCards Identifiers for PIR58897 Gene

  • GC0XM046471

No data available for External Ids for PIR58897 Gene

Summaries for PIR58897 Gene

GeneCards Summary for PIR58897 Gene

PIR58897 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58897 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58897 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58897 Gene

Genomics for PIR58897 Gene

GeneHancer (GH) Regulatory Elements for PIR58897 Gene

Promoters and enhancers for PIR58897 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ046572 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 0.3 +37.2 37200 5.2 HDGF PKNOX1 ARID4B SIN3A YY1 GLIS2 ZNF143 ATF7 SP3 GLIS1 CHST7 INE1 SLC9A7 RP2 ARAF UBA1 ZNF674 PIR58897
GH0XJ046625 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -16.2 -16222 4.5 PKNOX1 FEZF1 BATF IRF4 SCRT2 ATF7 FOS ETV6 BCLAF1 IKZF2 CHST7 SLC9A7 RP2 ZNF674 PGAM1P7 PIR58897
GH0XJ046586 Enhancer 0.8 Ensembl ENCODE 0.3 +23.0 23032 3.6 NANOG JUNB EBF1 BATF RELA JUND IKZF1 ATF7 WT1 RUNX3 SLC9A7 KRBOX4 CHST7 PIR58897
GH0XJ046577 Enhancer 0.8 FANTOM5 ENCODE 0.3 +34.3 34342 0.5 ZNF341 ZNF266 ZXDB TRIM28 CHST7 INE1 RP2 UBA1 LOC100113397 RBM10 ZNF674 PIR58897
GH0XJ046581 Enhancer 0.7 Ensembl ENCODE 0.3 +28.4 28434 3.3 JUND NFIC NFIB FOSL2 PRDM1 SLC9A7 KRBOX4 CHST7 PIR58897
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58897 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58897 Gene

Genomic Locations for PIR58897 Gene
chrX:46,611,798-46,611,826
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chrX:46,471,233-46,471,261
(GRCh37/hg19)
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR58897 Gene

Genes around PIR58897 on UCSC Golden Path with GeneCards custom track

PIR58897 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58897 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58897 Gene

Function for PIR58897 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58897 Gene

Localization for PIR58897 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58897 Gene

Pathways & Interactions for PIR58897 Gene

SuperPathways for PIR58897 Gene

No Data Available

Interacting Proteins for PIR58897 Gene

Gene Ontology (GO) - Biological Process for PIR58897 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58897 Gene

Drugs & Compounds for PIR58897 Gene

No Compound Related Data Available

Transcripts for PIR58897 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58897 Gene

No ASD Table

Relevant External Links for PIR58897 Gene

GeneLoc Exon Structure for
PIR58897

No data available for mRNA/cDNA for PIR58897 Gene

Expression for PIR58897 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58897 Gene

Orthologs for PIR58897 Gene

No data available for Orthologs and Evolution for PIR58897 Gene

Paralogs for PIR58897 Gene

No data available for Paralogs for PIR58897 Gene

Variants for PIR58897 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58897 Gene

Disorders for PIR58897 Gene

No disorders were found for PIR58897 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58897 Gene

Publications for PIR58897 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58897 Gene

Sources for PIR58897 Gene

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