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Aliases for PIR58890 Gene

Subcategory (RNA class) for PIR58890 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR58890 Gene

No Aliases found

Previous GeneCards Identifiers for PIR58890 Gene

  • GC10P080779
  • GC10P081211
  • GC10P077847
  • GC10P078080
  • GC10P078313
  • GC10P078557
  • GC10P078808
  • GC10P079055
  • GC10P079306

No data available for External Ids for PIR58890 Gene

Summaries for PIR58890 Gene

GeneCards Summary for PIR58890 Gene

PIR58890 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58890 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR58890

Additional gene information for PIR58890 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58890 Gene

Genomics for PIR58890 Gene

GeneHancer (GH) Regulatory Elements for PIR58890 Gene

Promoters and enhancers for PIR58890 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I077763 Enhancer 0.4 dbSUPER 550.8 -1.0 -1033 2.3 CTCF RFX1 ZFP37 GC10P081398 GC10P081408 GC10P081436 GC10P081437 GC10P081438 GC10P081444 GC10P081456 GC10P081481 GC10P081488 GC10P081493
GH10I077766 Enhancer 0.2 FANTOM5 550.8 +1.1 1052 0.4 GC10P081399 GC10P081409 GC10P081429 GC10P081432 GC10P081434 GC10P081436 GC10P081437 GC10P081438 GC10P081445 GC10P081456
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58890 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58890 Gene

Genomic Locations for PIR58890 Gene
chr10:77,765,398-77,765,430
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand
chr10:79,525,156-79,525,188
(GRCh37/hg19)

Genomic View for PIR58890 Gene

Genes around PIR58890 on UCSC Golden Path with GeneCards custom track

PIR58890 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58890 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR58890 Gene

ORGUL Member Location for PIR58890 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58890 Gene

Proteins for PIR58890 Gene

Post-translational modifications for PIR58890 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58890 Gene

Domains & Families for PIR58890 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58890 Gene

Function for PIR58890 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58890 Gene

Localization for PIR58890 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58890 Gene

Pathways & Interactions for PIR58890 Gene

SuperPathways for PIR58890 Gene

No Data Available

Interacting Proteins for PIR58890 Gene

Gene Ontology (GO) - Biological Process for PIR58890 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58890 Gene

Drugs & Compounds for PIR58890 Gene

No Compound Related Data Available

Transcripts for PIR58890 Gene

fRNAdb Secondary structures for PIR58890 Gene

  • FR320343
  • FR339873
  • FR100952

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58890 Gene

No ASD Table

Relevant External Links for PIR58890 Gene

GeneLoc Exon Structure for
PIR58890

No data available for mRNA/cDNA for PIR58890 Gene

Expression for PIR58890 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58890 Gene

Orthologs for PIR58890 Gene

No data available for Orthologs and Evolution for PIR58890 Gene

Paralogs for PIR58890 Gene

No data available for Paralogs for PIR58890 Gene

Variants for PIR58890 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58890 Gene

Disorders for PIR58890 Gene

No disorders were found for PIR58890 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58890 Gene

Publications for PIR58890 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58890 Gene

Sources for PIR58890 Gene

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