Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR58885 Gene

Subcategory (RNA class) for PIR58885 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58885 Gene

No Aliases found

ORGUL Members for PIR58885 Gene

Previous GeneCards Identifiers for PIR58885 Gene

  • GC14P104198

No data available for External Ids for PIR58885 Gene

Summaries for PIR58885 Gene

GeneCards Summary for PIR58885 Gene

PIR58885 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58885 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58885 Gene

Genomics for PIR58885 Gene

GeneHancer (GH) Regulatory Elements for PIR58885 Gene

Promoters and enhancers for PIR58885 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J103731 Enhancer 0.2 dbSUPER 650.7 +0.9 931 3.7 PIR58885 XRCC3 ENSG00000202275 PPP1R13B RNU7-160P ENSG00000246451 KLC1 ZFYVE21 ENSG00000270591
GH14J103729 Enhancer 1 ENCODE dbSUPER 0.7 -2.1 -2068 1.4 HDAC1 PKNOX1 RAD21 YY1 TCF12 EGR1 RXRA ZNF592 ZNF148 SP1 PPP1R13B RNU7-160P ATP5MPL ENSG00000253096 PIR58885 ZFYVE21
GH14J103735 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.2 4150 2.5 GTF2F1 CTCF ESRRA SIN3A CEBPG CTBP1 GATA3 ZNF600 TCF7L2 SMARCE1 XRCC3 ZFYVE21 ENSG00000202275 ENSG00000269958 PPP1R13B EXOC3L4 PIR58885 ENSG00000270591
GH14J103745 Enhancer 0.9 ENCODE dbSUPER 0.4 +13.2 13182 0.2 FOXA2 MAX ZNF644 RAD21 RARA YY1 EGR1 HNF4G NR2F6 HOMEZ ENSG00000202275 PIR58885 ENSG00000270591 PPP1R13B
GH14J103727 Enhancer 0.4 dbSUPER 0.7 -4.8 -4844 0.3 CTCF ZBTB33 ENSG00000253096 RNU7-160P PIR58885 ZFYVE21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58885 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58885 Gene

Genomic Locations for PIR58885 Gene
chr14:103,732,457-103,732,483
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr14:104,198,794-104,198,820
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR58885 Gene

Genes around PIR58885 on UCSC Golden Path with GeneCards custom track

PIR58885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58885 Gene

Function for PIR58885 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58885 Gene

Localization for PIR58885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58885 Gene

Pathways & Interactions for PIR58885 Gene

SuperPathways for PIR58885 Gene

No Data Available

Interacting Proteins for PIR58885 Gene

Gene Ontology (GO) - Biological Process for PIR58885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58885 Gene

Drugs & Compounds for PIR58885 Gene

No Compound Related Data Available

Transcripts for PIR58885 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58885 Gene

No ASD Table

Relevant External Links for PIR58885 Gene

GeneLoc Exon Structure for
PIR58885

No data available for mRNA/cDNA for PIR58885 Gene

Expression for PIR58885 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58885 Gene

Orthologs for PIR58885 Gene

No data available for Orthologs and Evolution for PIR58885 Gene

Paralogs for PIR58885 Gene

No data available for Paralogs for PIR58885 Gene

Variants for PIR58885 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58885 Gene

Disorders for PIR58885 Gene

No disorders were found for PIR58885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58885 Gene

Publications for PIR58885 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58885 Gene

Sources for PIR58885 Gene

Content
Loading form....