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Aliases for PIR58884 Gene

Subcategory (RNA class) for PIR58884 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR58884 Gene

No Aliases found

ORGUL Members for PIR58884 Gene

Previous GeneCards Identifiers for PIR58884 Gene

  • GC10M080054

No data available for External Ids for PIR58884 Gene

Summaries for PIR58884 Gene

GeneCards Summary for PIR58884 Gene

PIR58884 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58884 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR58884

Additional gene information for PIR58884 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58884 Gene

Genomics for PIR58884 Gene

GeneHancer (GH) Regulatory Elements for PIR58884 Gene

Promoters and enhancers for PIR58884 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I078292 Enhancer 0.8 ENCODE dbSUPER 550.8 +1.8 1783 1.9 RXRA MAX ZIC2 POLR2A RCOR1 MYC EZH2 CHD2 ENSG00000229543 GC10M078296 PIR58884 GC10P080329 LINC00595 LINC00856 ENSG00000282863
GH10I078299 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 -4.9 -4920 1.4 PKNOX1 NFATC3 NFYC ASH1L MAFG ELF1 SP1 MBD2 ZNF316 POLR2A GC10M078296 PIR58884 ENSG00000229543 ENSG00000230229 ENSG00000282863 LINC00595 LINC00856
GH10I078301 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -7.7 -7679 2.6 HDGF PKNOX1 CLOCK SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000228748 ZMIZ1-AS1 GC10M078296 PIR58884 ENSG00000230229 ENSG00000282863 LINC00595 LINC00856
GH10I078331 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -36.7 -36724 1.3 ZNF398 FOS ZIC2 ENSG00000230229 GC10M078296 PIR58884 ENSG00000282863 LINC00856 LINC00595
GH10I078312 Enhancer 0.7 ENCODE dbSUPER 0.4 -17.9 -17864 1.9 JUND POLR2A ZNF366 ZNF512 ZNF239 NR2F2 GC10M078296 PIR58884 ENSG00000230229 ENSG00000282863 LINC00595 LINC00856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58884 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58884 Gene

Genomic Locations for PIR58884 Gene
chr10:78,295,168-78,295,198
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr10:80,054,925-80,054,955
(GRCh37/hg19)

Genomic View for PIR58884 Gene

Genes around PIR58884 on UCSC Golden Path with GeneCards custom track

PIR58884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58884 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR58884 Gene

ORGUL Member Location for PIR58884 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58884 Gene

Proteins for PIR58884 Gene

Post-translational modifications for PIR58884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58884 Gene

Domains & Families for PIR58884 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58884 Gene

Function for PIR58884 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58884 Gene

Localization for PIR58884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58884 Gene

Pathways & Interactions for PIR58884 Gene

SuperPathways for PIR58884 Gene

No Data Available

Interacting Proteins for PIR58884 Gene

Gene Ontology (GO) - Biological Process for PIR58884 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58884 Gene

Drugs & Compounds for PIR58884 Gene

No Compound Related Data Available

Transcripts for PIR58884 Gene

fRNAdb Secondary structures for PIR58884 Gene

  • FR034348

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58884 Gene

No ASD Table

Relevant External Links for PIR58884 Gene

GeneLoc Exon Structure for
PIR58884

No data available for mRNA/cDNA for PIR58884 Gene

Expression for PIR58884 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58884 Gene

Orthologs for PIR58884 Gene

No data available for Orthologs and Evolution for PIR58884 Gene

Paralogs for PIR58884 Gene

No data available for Paralogs for PIR58884 Gene

Variants for PIR58884 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58884 Gene

Disorders for PIR58884 Gene

No disorders were found for PIR58884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58884 Gene

Publications for PIR58884 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58884 Gene

Sources for PIR58884 Gene

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