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Aliases for PIR58880 Gene

Subcategory (RNA class) for PIR58880 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58880 Gene

No Aliases found

ORGUL Members for PIR58880 Gene

Previous GeneCards Identifiers for PIR58880 Gene

  • GC06P079997
  • GC06P080014
  • GC06P080019
  • GC06P080036
  • GC06P080045
  • GC06P080062
  • GC06P080080
  • GC06P080092

No data available for External Ids for PIR58880 Gene

Summaries for PIR58880 Gene

GeneCards Summary for PIR58880 Gene

PIR58880 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58880 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR58880

Additional gene information for PIR58880 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58880 Gene

Genomics for PIR58880 Gene

GeneHancer (GH) Regulatory Elements for PIR58880 Gene

Promoters and enhancers for PIR58880 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J079980 Enhancer 0.5 dbSUPER 650.7 +0.3 286 6.8 OSR2 CTCF HNF1A ZNF140 CBFA2T2 RAD21 GC06P080108 GC06P080123 GC06P080124 GC06P080135 GC06P080136 GC06P080141 GC06P080142 PIR54609 PIR62818 PIR39637
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58880 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58880 Gene

Genomic Locations for PIR58880 Gene
chr6:79,983,251-79,983,285
(GRCh38/hg38)
Size:
35 bases
Orientation:
Plus strand

Genomic View for PIR58880 Gene

Genes around PIR58880 on UCSC Golden Path with GeneCards custom track

PIR58880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR58880 Gene

ORGUL Member Location for PIR58880 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58880 Gene

Function for PIR58880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58880 Gene

Localization for PIR58880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58880 Gene

Pathways & Interactions for PIR58880 Gene

SuperPathways for PIR58880 Gene

No Data Available

Interacting Proteins for PIR58880 Gene

Gene Ontology (GO) - Biological Process for PIR58880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58880 Gene

Drugs & Compounds for PIR58880 Gene

No Compound Related Data Available

Transcripts for PIR58880 Gene

fRNAdb Secondary structures for PIR58880 Gene

  • FR301301

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58880 Gene

No ASD Table

Relevant External Links for PIR58880 Gene

GeneLoc Exon Structure for
PIR58880

No data available for mRNA/cDNA for PIR58880 Gene

Expression for PIR58880 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58880 Gene

Orthologs for PIR58880 Gene

No data available for Orthologs and Evolution for PIR58880 Gene

Paralogs for PIR58880 Gene

No data available for Paralogs for PIR58880 Gene

Variants for PIR58880 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58880 Gene

Disorders for PIR58880 Gene

No disorders were found for PIR58880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58880 Gene

Publications for PIR58880 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58880 Gene

Sources for PIR58880 Gene

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