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Aliases for PIR58878 Gene

Subcategory (RNA class) for PIR58878 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR58878 Gene

No Aliases found

ORGUL Members for PIR58878 Gene

Previous GeneCards Identifiers for PIR58878 Gene

  • GC16P066320

No data available for External Ids for PIR58878 Gene

Summaries for PIR58878 Gene

GeneCards Summary for PIR58878 Gene

PIR58878 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58878 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58878 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58878 Gene

Genomics for PIR58878 Gene

GeneHancer (GH) Regulatory Elements for PIR58878 Gene

Promoters and enhancers for PIR58878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I066269 Enhancer 1 Ensembl ENCODE 0.4 -16.4 -16391 1.6 ELF3 RB1 SIN3A ZNF2 ZNF48 RAD21 ZNF335 ZNF366 ZNF143 ATF7 KIAA0895L NAE1 HSF4 LOC105371317 GC16P066286 PIR58878
GH16I066276 Enhancer 0.8 ENCODE 0.4 -8.9 -8908 3.1 NCOA3 CTCF PKNOX1 KLF1 CLOCK NFIB NEUROD1 CEBPG RAD21 ZNF335 PIR58878 GC16P066286 LOC105371317
GH16I066295 Enhancer 0.5 ENCODE 0.4 +10.5 10486 2.8 SMARCE1 SCRT1 ZNF217 CTBP1 GATA3 DPF2 LINC00920 GC16P066302 PIR58878 GC16P066286
GH16I066275 Enhancer 0.5 ENCODE 0.4 -10.6 -10601 0.2 ZNF335 CTCF ZNF654 HLF ZNF143 SMC3 RAD21 LOC105371317 PIR58878 GC16P066286
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58878 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58878 Gene

Genomic Locations for PIR58878 Gene
chr16:66,286,604-66,286,634
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr16:66,320,507-66,320,537
(GRCh37/hg19)

Genomic View for PIR58878 Gene

Genes around PIR58878 on UCSC Golden Path with GeneCards custom track

PIR58878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR58878 Gene

ORGUL Member Location for PIR58878 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58878 Gene

Proteins for PIR58878 Gene

Post-translational modifications for PIR58878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58878 Gene

Domains & Families for PIR58878 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58878 Gene

Function for PIR58878 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58878 Gene

Localization for PIR58878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58878 Gene

Pathways & Interactions for PIR58878 Gene

SuperPathways for PIR58878 Gene

No Data Available

Interacting Proteins for PIR58878 Gene

Gene Ontology (GO) - Biological Process for PIR58878 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58878 Gene

Drugs & Compounds for PIR58878 Gene

No Compound Related Data Available

Transcripts for PIR58878 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58878 Gene

No ASD Table

Relevant External Links for PIR58878 Gene

GeneLoc Exon Structure for
PIR58878

No data available for mRNA/cDNA for PIR58878 Gene

Expression for PIR58878 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58878 Gene

Orthologs for PIR58878 Gene

No data available for Orthologs and Evolution for PIR58878 Gene

Paralogs for PIR58878 Gene

No data available for Paralogs for PIR58878 Gene

Variants for PIR58878 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58878 Gene

Disorders for PIR58878 Gene

No disorders were found for PIR58878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58878 Gene

Publications for PIR58878 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58878 Gene

Sources for PIR58878 Gene

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