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Aliases for PIR58856 Gene

Subcategory (RNA class) for PIR58856 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58856 Gene

No Aliases found

ORGUL Members for PIR58856 Gene

Previous GeneCards Identifiers for PIR58856 Gene

  • GC22P039928

No data available for External Ids for PIR58856 Gene

Summaries for PIR58856 Gene

GeneCards Summary for PIR58856 Gene

PIR58856 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58856 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58856 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58856 Gene

Genomics for PIR58856 Gene

GeneHancer (GH) Regulatory Elements for PIR58856 Gene

Promoters and enhancers for PIR58856 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J039530 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.7 -735 2.7 HDGF FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 RPS19BP1 PIR58856 ATF4 RPL3 TNRC6B ENSG00000228274 GC22P039523 PIR62526
GH22J039533 Enhancer 0.4 ENCODE 650.7 +1.0 985 0.2 TGIF2 KDM1A RPS19BP1 PIR58856 CACNA1I FAM83F MGAT3 TNRC6B RPL3
GH22J039534 Enhancer 1.2 Ensembl ENCODE 0.7 +2.1 2080 1.9 HDGF ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 ETS1 GLIS2 ZNF213 CACNA1I ATF4 FAM83F MGAT3 TNRC6B RPL3 PIR58856
GH22J039545 Enhancer 0.9 ENCODE 0.4 +13.1 13105 0.2 MLX ZFP64 ARID4B SIN3A ZNF48 SLC30A9 ZNF766 ZNF143 NFKBIZ NFYC CACNA1I PIR58856 GC22M043047
GH22J039557 Promoter 0.6 EPDnew 0.3 +25.0 24970 0.1 VEZF1 CACNA1I MGAT3 GC22M043047 PIR58856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58856 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58856 Gene

Genomic Locations for PIR58856 Gene
chr22:39,532,866-39,532,895
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr22:39,928,871-39,928,900
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR58856 Gene

Genes around PIR58856 on UCSC Golden Path with GeneCards custom track

PIR58856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58856 Gene

Function for PIR58856 Gene

Phenotypes From GWAS Catalog for PIR58856 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58856 Gene

Localization for PIR58856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58856 Gene

Pathways & Interactions for PIR58856 Gene

SuperPathways for PIR58856 Gene

No Data Available

Interacting Proteins for PIR58856 Gene

Gene Ontology (GO) - Biological Process for PIR58856 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58856 Gene

Drugs & Compounds for PIR58856 Gene

No Compound Related Data Available

Transcripts for PIR58856 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58856 Gene

No ASD Table

Relevant External Links for PIR58856 Gene

GeneLoc Exon Structure for
PIR58856

No data available for mRNA/cDNA for PIR58856 Gene

Expression for PIR58856 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58856 Gene

Orthologs for PIR58856 Gene

No data available for Orthologs and Evolution for PIR58856 Gene

Paralogs for PIR58856 Gene

No data available for Paralogs for PIR58856 Gene

Variants for PIR58856 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58856 Gene

Disorders for PIR58856 Gene

No disorders were found for PIR58856 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58856 Gene

Publications for PIR58856 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58856 Gene

Sources for PIR58856 Gene

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