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Aliases for PIR58820 Gene

Subcategory (RNA class) for PIR58820 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR58820 Gene

No Aliases found

ORGUL Members for PIR58820 Gene

Previous GeneCards Identifiers for PIR58820 Gene

  • GC16M085707

No data available for External Ids for PIR58820 Gene

Summaries for PIR58820 Gene

GeneCards Summary for PIR58820 Gene

PIR58820 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58820 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58820 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58820 Gene

Genomics for PIR58820 Gene

GeneHancer (GH) Regulatory Elements for PIR58820 Gene

Promoters and enhancers for PIR58820 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J085673 Enhancer 1 ENCODE dbSUPER 650.7 +0.1 69 1.4 FOXA2 NFIB SIN3A RAD21 YY1 EGR1 SCRT2 RCOR1 EGR2 SMAD5 PIR58820 PIR34657 RNU1-103P GSE1
GH16J085675 Enhancer 0.7 ENCODE 650.7 -1.4 -1373 0.2 HDGF CTCF MAX SIN3A RAD21 POLR2B E2F8 POLR2A SMC3 ZNF444 PIR58820 GINS2 RNU1-103P GSE1
GH16J085687 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -14.1 -14083 2.4 PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 POLR2B GINS2 MTHFSD RNU1-103P ENSG00000270184 ZDHHC7 RN7SL381P EMC8 USP10 PIR58820
GH16J085679 Enhancer 0.8 dbSUPER 0.4 -6.3 -6280 2 HDGF FOXA2 CLOCK NFIB NEUROD1 SIN3A RAD21 YY1 EGR1 ATF7 EMC8 RNU1-103P COX4I1 MTHFSD GINS2 PIR58820
GH16J085678 Enhancer 0.3 ENCODE 0.7 -4.6 -4568 1 POLR2A GINS2 RNU1-103P COX4I1 EMC8 PIR58820
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58820 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58820 Gene

Genomic Locations for PIR58820 Gene
chr16:85,674,348-85,674,377
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr16:85,707,954-85,707,983
(GRCh37/hg19)
Size:
30 bases
Orientation:
Minus strand

Genomic View for PIR58820 Gene

Genes around PIR58820 on UCSC Golden Path with GeneCards custom track

PIR58820 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58820 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58820 Gene

Function for PIR58820 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58820 Gene

Localization for PIR58820 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58820 Gene

Pathways & Interactions for PIR58820 Gene

SuperPathways for PIR58820 Gene

No Data Available

Interacting Proteins for PIR58820 Gene

Gene Ontology (GO) - Biological Process for PIR58820 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58820 Gene

Drugs & Compounds for PIR58820 Gene

No Compound Related Data Available

Transcripts for PIR58820 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58820 Gene

No ASD Table

Relevant External Links for PIR58820 Gene

GeneLoc Exon Structure for
PIR58820

No data available for mRNA/cDNA for PIR58820 Gene

Expression for PIR58820 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58820 Gene

Orthologs for PIR58820 Gene

No data available for Orthologs and Evolution for PIR58820 Gene

Paralogs for PIR58820 Gene

No data available for Paralogs for PIR58820 Gene

Variants for PIR58820 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58820 Gene

Disorders for PIR58820 Gene

No disorders were found for PIR58820 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58820 Gene

Publications for PIR58820 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58820 Gene

Sources for PIR58820 Gene

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