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Aliases for PIR58727 Gene

Subcategory (RNA class) for PIR58727 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR58727 Gene

No Aliases found

ORGUL Members for PIR58727 Gene

No data available for External Ids for PIR58727 Gene

Summaries for PIR58727 Gene

GeneCards Summary for PIR58727 Gene

PIR58727 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58727 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58727 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58727 Gene

Genomics for PIR58727 Gene

GeneHancer (GH) Regulatory Elements for PIR58727 Gene

Promoters and enhancers for PIR58727 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I000418 Enhancer 0.7 ENCODE dbSUPER 550.8 -1.2 -1222 1.8 USF1 POLR2A MAX USF2 ZIC2 MYC ENSG00000250645 GC05M000414 PIR47117 PIR58727 EXOC3 EXOC3-AS1 AHRR
GH05I000424 Enhancer 1.2 FANTOM5 Ensembl dbSUPER 0.8 +4.5 4477 1 HDGF BACH1 EBF1 ZIC2 KLF5 ZNF335 ZFHX2 POLR2A ZNF143 ATF7 EXOC3 SLC9A3-AS1 AHRR PDCD6 EXOC3-AS1 ZDHHC11 PIR58727 GC05M000432 PIR54496
GH05I000429 Enhancer 1 ENCODE dbSUPER 0.4 +10.3 10287 2.4 NFIB SIN3A ZNF2 IRF4 RAD21 ZNF121 GLIS2 ZNF207 ZNF143 BCLAF1 GC05M000427 GC05M000432 PIR54496 SLC9A3-AS1 EXOC3 EXOC3-AS1 PIR58727 AHRR
GH05I000426 Enhancer 0.9 FANTOM5 0.4 +6.5 6490 0.4 HDGF PKNOX1 NFIB NEUROD1 YBX1 ZBTB7B ZNF366 ZNF207 KLF7 ZNF680 SLC9A3-AS1 BRD9 AHRR LOC100421419 PDCD6 EXOC3 GC05M000432 PIR54496 PIR58727
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58727 Gene

Genomic Locations for PIR58727 Gene
chr5:420,224-420,250
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr5:420,339-420,365
(GRCh37/hg19)

Genomic View for PIR58727 Gene

Genes around PIR58727 on UCSC Golden Path with GeneCards custom track

PIR58727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58727 Gene

Proteins for PIR58727 Gene

Post-translational modifications for PIR58727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58727 Gene

Domains & Families for PIR58727 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58727 Gene

Function for PIR58727 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58727 Gene

Localization for PIR58727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58727 Gene

Pathways & Interactions for PIR58727 Gene

SuperPathways for PIR58727 Gene

No Data Available

Interacting Proteins for PIR58727 Gene

Gene Ontology (GO) - Biological Process for PIR58727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58727 Gene

Drugs & Compounds for PIR58727 Gene

No Compound Related Data Available

Transcripts for PIR58727 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58727 Gene

No ASD Table

Relevant External Links for PIR58727 Gene

GeneLoc Exon Structure for
PIR58727

No data available for mRNA/cDNA for PIR58727 Gene

Expression for PIR58727 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58727 Gene

Orthologs for PIR58727 Gene

No data available for Orthologs and Evolution for PIR58727 Gene

Paralogs for PIR58727 Gene

No data available for Paralogs for PIR58727 Gene

Variants for PIR58727 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58727 Gene

Disorders for PIR58727 Gene

No disorders were found for PIR58727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58727 Gene

Publications for PIR58727 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58727 Gene

Sources for PIR58727 Gene

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