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Aliases for PIR58709 Gene

Subcategory (RNA class) for PIR58709 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR58709 Gene

No Aliases found

ORGUL Members for PIR58709 Gene

Previous GeneCards Identifiers for PIR58709 Gene

  • GC17P017699

No data available for External Ids for PIR58709 Gene

Summaries for PIR58709 Gene

GeneCards Summary for PIR58709 Gene

PIR58709 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR58709 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR58709 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR58709 Gene

Genomics for PIR58709 Gene

GeneHancer (GH) Regulatory Elements for PIR58709 Gene

Promoters and enhancers for PIR58709 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I017791 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 -1.5 -1524 2 MXI1 KLF17 GLIS2 POLR2A VEZF1 RCOR1 EGR2 EZH2 PIR58709 RAI1 TOM1L2 GC17M017734
GH17I017789 Enhancer 0.8 ENCODE dbSUPER 0.8 -3.9 -3933 1.2 MAZ ZNF449 NR2F1 REST HIC1 PATZ1 NR2C1 NR2F6 RCOR1 PRDM10 RAI1 ENSG00000264885 TOM1L2 PIR58709 GC17M017734
GH17I017785 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.2 -9234 0.2 SCRT1 CTCF MXI1 SAP130 ARID4B RAD21 ZNF148 GLIS2 SCRT2 NR2F6 GC17M017734 PIR58709 RAI1
GH17I017786 Enhancer 0.7 ENCODE dbSUPER 0.4 -7.9 -7854 0.2 SOX5 SOX13 FOXA2 HNF4A ZBTB26 GC17M017734 RAI1 PIR58709
GH17I017800 Enhancer 0.3 dbSUPER 0.4 +6.9 6888 1.8 CTCF SMCR5 RAI1-AS1 RAI1 PIR43249 PIR58709
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR58709 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR58709 Gene

Genomic Locations for PIR58709 Gene
chr17:17,794,316-17,794,345
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr17:17,697,630-17,697,659
(GRCh37/hg19)

Genomic View for PIR58709 Gene

Genes around PIR58709 on UCSC Golden Path with GeneCards custom track

PIR58709 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR58709 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR58709 Gene

Proteins for PIR58709 Gene

Post-translational modifications for PIR58709 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR58709 Gene

Domains & Families for PIR58709 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR58709 Gene

Function for PIR58709 Gene

Phenotypes From GWAS Catalog for PIR58709 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR58709 Gene

Localization for PIR58709 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR58709 Gene

Pathways & Interactions for PIR58709 Gene

SuperPathways for PIR58709 Gene

No Data Available

Interacting Proteins for PIR58709 Gene

Gene Ontology (GO) - Biological Process for PIR58709 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR58709 Gene

Drugs & Compounds for PIR58709 Gene

No Compound Related Data Available

Transcripts for PIR58709 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR58709 Gene

No ASD Table

Relevant External Links for PIR58709 Gene

GeneLoc Exon Structure for
PIR58709

No data available for mRNA/cDNA for PIR58709 Gene

Expression for PIR58709 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR58709 Gene

Orthologs for PIR58709 Gene

No data available for Orthologs and Evolution for PIR58709 Gene

Paralogs for PIR58709 Gene

No data available for Paralogs for PIR58709 Gene

Variants for PIR58709 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR58709 Gene

Disorders for PIR58709 Gene

No disorders were found for PIR58709 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR58709 Gene

Publications for PIR58709 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR58709 Gene

Sources for PIR58709 Gene

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