Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR57553 Gene

Subcategory (RNA class) for PIR57553 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR57553 Gene

No Aliases found

ORGUL Members for PIR57553 Gene

Previous GeneCards Identifiers for PIR57553 Gene

  • GC01P038174

No data available for External Ids for PIR57553 Gene

Summaries for PIR57553 Gene

GeneCards Summary for PIR57553 Gene

PIR57553 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR57553 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR57553

Additional gene information for PIR57553 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR57553 Gene

Genomics for PIR57553 Gene

GeneHancer (GH) Regulatory Elements for PIR57553 Gene

Promoters and enhancers for PIR57553 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I037705 Enhancer 0.4 ENCODE 0.8 -3.8 -3826 0.2 ATF4 ATF2 EPHA10 ENSG00000233728 MTF1 ENSG00000230955 GC01P037710 PIR57553 CDCA8
GH01I037696 Enhancer 0.2 ENCODE 0.4 -11.5 -11517 1.5 EPHA10 INPP5B C1orf109 CDCA8 GC01P037710 PIR57553
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR57553 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR57553 Gene

Genomic Locations for PIR57553 Gene
chr1:37,709,010-37,709,040
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr1:38,174,682-38,174,712
(GRCh37/hg19)

Genomic View for PIR57553 Gene

Genes around PIR57553 on UCSC Golden Path with GeneCards custom track

PIR57553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR57553 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR57553 Gene

ORGUL Member Location for PIR57553 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR57553 Gene

Proteins for PIR57553 Gene

Post-translational modifications for PIR57553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR57553 Gene

Domains & Families for PIR57553 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR57553 Gene

Function for PIR57553 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR57553 Gene

Localization for PIR57553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR57553 Gene

Pathways & Interactions for PIR57553 Gene

SuperPathways for PIR57553 Gene

No Data Available

Interacting Proteins for PIR57553 Gene

Gene Ontology (GO) - Biological Process for PIR57553 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR57553 Gene

Drugs & Compounds for PIR57553 Gene

No Compound Related Data Available

Transcripts for PIR57553 Gene

fRNAdb Secondary structures for PIR57553 Gene

  • FR069549

Alternative Splicing Database (ASD) splice patterns (SP) for PIR57553 Gene

No ASD Table

Relevant External Links for PIR57553 Gene

GeneLoc Exon Structure for
PIR57553

No data available for mRNA/cDNA for PIR57553 Gene

Expression for PIR57553 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR57553 Gene

Orthologs for PIR57553 Gene

No data available for Orthologs and Evolution for PIR57553 Gene

Paralogs for PIR57553 Gene

No data available for Paralogs for PIR57553 Gene

Variants for PIR57553 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR57553 Gene

Disorders for PIR57553 Gene

No disorders were found for PIR57553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR57553 Gene

Publications for PIR57553 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR57553 Gene

Sources for PIR57553 Gene

Content
Loading form....