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Aliases for PIR56411 Gene

Subcategory (RNA class) for PIR56411 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR56411 Gene

No Aliases found

ORGUL Members for PIR56411 Gene

Previous GeneCards Identifiers for PIR56411 Gene

  • GC17P061865

No data available for External Ids for PIR56411 Gene

Summaries for PIR56411 Gene

GeneCards Summary for PIR56411 Gene

PIR56411 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR56411 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR56411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR56411 Gene

Genomics for PIR56411 Gene

GeneHancer (GH) Regulatory Elements for PIR56411 Gene

Promoters and enhancers for PIR56411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I063783 Enhancer 0.9 ENCODE dbSUPER 550.8 -1.0 -953 4.3 PAF1 SOX13 KLF1 SAP130 FOXA3 ARID4B RARA ZGPAT JUND PRDM6 PIR56411 FTSJ3 PSMC5 ENSG00000125695 STRADA MAP3K3 CCDC47 DDX42
GH17I063825 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +40.0 39966 3.6 HDGF PKNOX1 CLOCK ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 FTSJ3 PSMC5 CEP95 DDX42 POLG2 SMARCD2 CSH2 DDX5 ENSG00000281311 ENSG00000265982
GH17I063780 Enhancer 1 ENCODE dbSUPER 0.4 -6.3 -6297 1.2 PKNOX1 NEUROD1 KLF17 FEZF1 FOS ZNF398 ZEB2 GLIS1 PRDM1 WT1 FTSJ3 ENSG00000265982 SMARCD2 DDX5 POLG2 ENSG00000281311 DDX42 CEP95 ERN1 CCDC47
GH17I063777 Enhancer 0.4 dbSUPER 0.4 -8.7 -8708 1 MLLT1 ZBTB17 FTSJ3 DDX42 CCDC47 PIR56411
GH17I063816 Enhancer 0.5 ENCODE 0.3 +29.6 29631 1.4 PAF1 MAFF ZNF316 ATF3 MAFG MAFK EMSY FTSJ3 CSH2 SMARCD2 PSMC5 PIR56411 DDX42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR56411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR56411 Gene

Genomic Locations for PIR56411 Gene
chr17:63,787,095-63,787,121
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr17:61,864,455-61,864,481
(GRCh37/hg19)

Genomic View for PIR56411 Gene

Genes around PIR56411 on UCSC Golden Path with GeneCards custom track

PIR56411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR56411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR56411 Gene

Proteins for PIR56411 Gene

Post-translational modifications for PIR56411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR56411 Gene

Domains & Families for PIR56411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR56411 Gene

Function for PIR56411 Gene

Phenotypes From GWAS Catalog for PIR56411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR56411 Gene

Localization for PIR56411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR56411 Gene

Pathways & Interactions for PIR56411 Gene

SuperPathways for PIR56411 Gene

No Data Available

Interacting Proteins for PIR56411 Gene

Gene Ontology (GO) - Biological Process for PIR56411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR56411 Gene

Drugs & Compounds for PIR56411 Gene

No Compound Related Data Available

Transcripts for PIR56411 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR56411 Gene

No ASD Table

Relevant External Links for PIR56411 Gene

GeneLoc Exon Structure for
PIR56411

No data available for mRNA/cDNA for PIR56411 Gene

Expression for PIR56411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR56411 Gene

Orthologs for PIR56411 Gene

No data available for Orthologs and Evolution for PIR56411 Gene

Paralogs for PIR56411 Gene

No data available for Paralogs for PIR56411 Gene

Variants for PIR56411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR56411 Gene

Disorders for PIR56411 Gene

No disorders were found for PIR56411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR56411 Gene

Publications for PIR56411 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR56411 Gene

Sources for PIR56411 Gene

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