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Aliases for PIR56403 Gene

Subcategory (RNA class) for PIR56403 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR56403 Gene

No Aliases found

ORGUL Members for PIR56403 Gene

Previous GeneCards Identifiers for PIR56403 Gene

  • GC01M036812

No data available for External Ids for PIR56403 Gene

Summaries for PIR56403 Gene

GeneCards Summary for PIR56403 Gene

PIR56403 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR56403 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR56403 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR56403 Gene

Genomics for PIR56403 Gene

GeneHancer (GH) Regulatory Elements for PIR56403 Gene

Promoters and enhancers for PIR56403 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I036348 Enhancer 0.5 ENCODE 550.8 -0.8 -829 0.2 TCF12 HDAC2 NCOR1 BHLHE40 CBFA2T3 PIR56403 PIR50342 STK40
GH01I036339 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +4.3 4255 6.8 BCOR CTCF RB1 JUN ARID4B ZIC2 ZNF48 RAD21 HIC1 POLR2B PIR49451 SH3D21 SNORA63C OSCP1 LSM10 RNU4-27P MAP7D1 TRAPPC3 ENSG00000116883 PIR56403
GH01I036347 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.2 -5166 7.7 HDGF ELF3 PKNOX1 SIN3A FEZF1 IRF4 RARA GLIS2 ZNF143 ATF7 CSF3R THRAP3 STK40 ENSG00000116883 SH3D21 AGO3 MAP7D1 AGO1 PIR50342 PIR56403
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR56403 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR56403 Gene

Genomic Locations for PIR56403 Gene
chr1:36,346,678-36,346,706
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr1:36,812,279-36,812,307
(GRCh37/hg19)

Genomic View for PIR56403 Gene

Genes around PIR56403 on UCSC Golden Path with GeneCards custom track

PIR56403 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR56403 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR56403 Gene

Proteins for PIR56403 Gene

Post-translational modifications for PIR56403 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR56403 Gene

Domains & Families for PIR56403 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR56403 Gene

Function for PIR56403 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR56403 Gene

Localization for PIR56403 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR56403 Gene

Pathways & Interactions for PIR56403 Gene

SuperPathways for PIR56403 Gene

No Data Available

Interacting Proteins for PIR56403 Gene

Gene Ontology (GO) - Biological Process for PIR56403 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR56403 Gene

Drugs & Compounds for PIR56403 Gene

No Compound Related Data Available

Transcripts for PIR56403 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR56403 Gene

No ASD Table

Relevant External Links for PIR56403 Gene

GeneLoc Exon Structure for
PIR56403

No data available for mRNA/cDNA for PIR56403 Gene

Expression for PIR56403 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR56403 Gene

Orthologs for PIR56403 Gene

No data available for Orthologs and Evolution for PIR56403 Gene

Paralogs for PIR56403 Gene

No data available for Paralogs for PIR56403 Gene

Variants for PIR56403 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR56403 Gene

Disorders for PIR56403 Gene

No disorders were found for PIR56403 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR56403 Gene

Publications for PIR56403 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR56403 Gene

Sources for PIR56403 Gene

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