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Aliases for PIR56040 Gene

Subcategory (RNA class) for PIR56040 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR56040 Gene

No Aliases found

ORGUL Members for PIR56040 Gene

Previous GeneCards Identifiers for PIR56040 Gene

  • GC19P010912

No data available for External Ids for PIR56040 Gene

Summaries for PIR56040 Gene

GeneCards Summary for PIR56040 Gene

PIR56040 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR56040 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR56040 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR56040 Gene

Genomics for PIR56040 Gene

GeneHancer (GH) Regulatory Elements for PIR56040 Gene

Promoters and enhancers for PIR56040 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I010796 Enhancer 0.9 ENCODE dbSUPER 0.8 -4.2 -4172 4.1 PKNOX1 BACH1 EBF1 GLI4 KLF5 RELA ZFHX2 FOXK2 ATF7 ZNF600 SLC44A2 SMARCA4 AP1M2 PIR56040 GC19P010786 DNM2
GH19I010805 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.8 +3.4 3433 1.3 POLR2A CEBPB SLC44A2 PIR56040 MIR199A1 DNM2
GH19I010808 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.2 12182 11.6 HDGF PKNOX1 ATF1 TCF12 ZNF121 ZNF766 GATA2 FOS ATF7 REST KRI1 ILF3 TIMM29 ZNF441 PPAN ZNF627 C19orf38 FBXL12 EIF3G ILF3-AS1
GH19I010789 Enhancer 0.3 ENCODE 0.4 -12.5 -12460 1.2 ZFP36 SLC44A2 GC19P010786 PIR56040 DNM2
GH19I010792 Enhancer 0.2 dbSUPER 0.4 -8.6 -8630 1.4 SLC44A2 SMARCA4 GC19P010786 PIR56040 DNM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR56040 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR56040 Gene

Genomic Locations for PIR56040 Gene
chr19:10,802,306-10,802,334
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr19:10,912,982-10,913,010
(GRCh37/hg19)

Genomic View for PIR56040 Gene

Genes around PIR56040 on UCSC Golden Path with GeneCards custom track

PIR56040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR56040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR56040 Gene

Proteins for PIR56040 Gene

Post-translational modifications for PIR56040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR56040 Gene

Domains & Families for PIR56040 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR56040 Gene

Function for PIR56040 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR56040 Gene

Localization for PIR56040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR56040 Gene

Pathways & Interactions for PIR56040 Gene

SuperPathways for PIR56040 Gene

No Data Available

Interacting Proteins for PIR56040 Gene

Gene Ontology (GO) - Biological Process for PIR56040 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR56040 Gene

Drugs & Compounds for PIR56040 Gene

No Compound Related Data Available

Transcripts for PIR56040 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR56040 Gene

No ASD Table

Relevant External Links for PIR56040 Gene

GeneLoc Exon Structure for
PIR56040

No data available for mRNA/cDNA for PIR56040 Gene

Expression for PIR56040 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR56040 Gene

Orthologs for PIR56040 Gene

No data available for Orthologs and Evolution for PIR56040 Gene

Paralogs for PIR56040 Gene

No data available for Paralogs for PIR56040 Gene

Variants for PIR56040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR56040 Gene

Disorders for PIR56040 Gene

No disorders were found for PIR56040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR56040 Gene

Publications for PIR56040 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR56040 Gene

Sources for PIR56040 Gene

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