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Aliases for PIR55648 Gene

Subcategory (RNA class) for PIR55648 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR55648 Gene

No Aliases found

ORGUL Members for PIR55648 Gene

Previous GeneCards Identifiers for PIR55648 Gene

  • GC10P051132

No data available for External Ids for PIR55648 Gene

Summaries for PIR55648 Gene

GeneCards Summary for PIR55648 Gene

PIR55648 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR55648 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR55648 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR55648 Gene

Genomics for PIR55648 Gene

GeneHancer (GH) Regulatory Elements for PIR55648 Gene

Promoters and enhancers for PIR55648 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049925 Enhancer 0.2 Ensembl 600.7 +1.8 1849 1 PIR55648 SLC9A3P3 TIMM23B PARG
GH10J049931 Enhancer 0.5 dbSUPER 0.4 +8.6 8575 3 SP7 HDAC1 ZSCAN5C ZNF366 KDM1A GFI1B PIR55648 TIMM23B PARG
GH10J049940 Promoter 0.5 Ensembl 0.4 +17.5 17549 4 TIMM23B LINC00843 PIR55648 PARG
GH10J049922 Enhancer 0.2 Ensembl 0.7 -2.1 -2051 0.4 PIR55648 GC10P049910 PARG
GH10J049929 Enhancer 0.2 dbSUPER 0.4 +5.9 5915 0.8 PIR55648 TIMM23B PARG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR55648 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR55648 Gene

Genomic Locations for PIR55648 Gene
chr10:49,924,452-49,924,478
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr10:51,132,498-51,132,524
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR55648 Gene

Genes around PIR55648 on UCSC Golden Path with GeneCards custom track

PIR55648 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR55648 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR55648 Gene

Proteins for PIR55648 Gene

Post-translational modifications for PIR55648 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR55648 Gene

Domains & Families for PIR55648 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR55648 Gene

Function for PIR55648 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR55648 Gene

Localization for PIR55648 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR55648 Gene

Pathways & Interactions for PIR55648 Gene

PathCards logo

SuperPathways for PIR55648 Gene

No Data Available

Interacting Proteins for PIR55648 Gene

Gene Ontology (GO) - Biological Process for PIR55648 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR55648 Gene

Drugs & Compounds for PIR55648 Gene

No Compound Related Data Available

Transcripts for PIR55648 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR55648 Gene

No ASD Table

Relevant External Links for PIR55648 Gene

GeneLoc Exon Structure for
PIR55648

No data available for mRNA/cDNA for PIR55648 Gene

Expression for PIR55648 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR55648 Gene

Orthologs for PIR55648 Gene

No data available for Orthologs and Evolution for PIR55648 Gene

Paralogs for PIR55648 Gene

No data available for Paralogs for PIR55648 Gene

Variants for PIR55648 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR55648 Gene

Disorders for PIR55648 Gene

No disorders were found for PIR55648 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR55648 Gene

Publications for PIR55648 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR55648 Gene

Products for PIR55648 Gene

Sources for PIR55648 Gene

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