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Aliases for PIR55404 Gene

Subcategory (RNA class) for PIR55404 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR55404 Gene

No Aliases found

ORGUL Members for PIR55404 Gene

Previous GeneCards Identifiers for PIR55404 Gene

  • GC20M003910

No data available for External Ids for PIR55404 Gene

Summaries for PIR55404 Gene

GeneCards Summary for PIR55404 Gene

PIR55404 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR55404 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR55404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR55404 Gene

Genomics for PIR55404 Gene

GeneHancer (GH) Regulatory Elements for PIR55404 Gene

Promoters and enhancers for PIR55404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I003929 Enhancer 1 Ensembl ENCODE 550.8 -0.9 -926 2.7 HDAC1 TCF12 GATA2 PAF1 NCOA1 CEBPB USF2 REST ZNF592 NFIC PIR55404 PIR37079 ENSG00000229539 RNF24 CENPB PANK2 CDC25B MAVS GC20P003875
GH20I003928 Enhancer 0.5 FANTOM5 550.8 +0.6 639 0.4 SCRT1 BCL11A POLR2A PIR55404 PANK2 ENSG00000229539 CDC25B CENPB RNF24 ENSG00000275582 GC20P003875
GH20I003925 Enhancer 1.1 Ensembl ENCODE 0.8 +2.5 2540 3.2 FOXA2 MLX ZFP64 ARID4B MZF1 ZNF2 ZNF48 ZSCAN9 RARA POLR2B ENSG00000229539 PANK2 CDC25B CENPB RNF24 MAVS ENSG00000275582 PIR55404 GC20P003875
GH20I003923 Enhancer 0.8 Ensembl ENCODE 0.4 +5.2 5245 1.1 KLF17 HIC1 NFIC ZFHX2 POLR2A FOS BCLAF1 EGR2 ENSG00000275582 ENSG00000229539 PANK2 AP5S1 CENPB CDC25B PIR55404 GC20P003875
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR55404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR55404 Gene

Genomic Locations for PIR55404 Gene
chr20:3,929,597-3,929,625
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr20:3,910,244-3,910,272
(GRCh37/hg19)

Genomic View for PIR55404 Gene

Genes around PIR55404 on UCSC Golden Path with GeneCards custom track

PIR55404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR55404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR55404 Gene

Proteins for PIR55404 Gene

Post-translational modifications for PIR55404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR55404 Gene

Domains & Families for PIR55404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR55404 Gene

Function for PIR55404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR55404 Gene

Localization for PIR55404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR55404 Gene

Pathways & Interactions for PIR55404 Gene

SuperPathways for PIR55404 Gene

No Data Available

Interacting Proteins for PIR55404 Gene

Gene Ontology (GO) - Biological Process for PIR55404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR55404 Gene

Drugs & Compounds for PIR55404 Gene

No Compound Related Data Available

Transcripts for PIR55404 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR55404 Gene

No ASD Table

Relevant External Links for PIR55404 Gene

GeneLoc Exon Structure for
PIR55404

No data available for mRNA/cDNA for PIR55404 Gene

Expression for PIR55404 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR55404 Gene

Orthologs for PIR55404 Gene

No data available for Orthologs and Evolution for PIR55404 Gene

Paralogs for PIR55404 Gene

No data available for Paralogs for PIR55404 Gene

Variants for PIR55404 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR55404 Gene

Disorders for PIR55404 Gene

No disorders were found for PIR55404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR55404 Gene

Publications for PIR55404 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR55404 Gene

Sources for PIR55404 Gene

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