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Aliases for PIR54988 Gene

Subcategory (RNA class) for PIR54988 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR54988 Gene

No Aliases found

ORGUL Members for PIR54988 Gene

Previous GeneCards Identifiers for PIR54988 Gene

  • GC19P035377
  • GC19P035426
  • GC19P035613
  • GC19P035722
  • GC19P035892
  • GC19P034883
  • GC19P034980
  • GC19P036945
  • GC19P035067
  • GC19P035174
  • GC19P035289
  • GC19P036056
  • GC19P036301
  • GC19P036468
  • GC19P036644
  • GC19P036804

No data available for External Ids for PIR54988 Gene

Summaries for PIR54988 Gene

GeneCards Summary for PIR54988 Gene

PIR54988 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR54988 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR54988 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR54988 Gene

Genomics for PIR54988 Gene

GeneHancer (GH) Regulatory Elements for PIR54988 Gene

Promoters and enhancers for PIR54988 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J034852 Enhancer 0.6 Ensembl 600.7 -0.3 -337 1.2 CEBPG CEBPA RXRB MNT NFIL3 NFIA RARA NR2F6 FOXA3 HLF GC19P037275 GC19P037276 GC19P037277 GC19P037279 GC19P037280 GC19P037281 GC19P037282 GC19P037283 GC19P037284 GC19P037287
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR54988 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR54988 Gene

Genomic Locations for PIR54988 Gene
chr19:34,853,337-34,853,364
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr19:35,344,241-35,344,268
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR54988 Gene

Genes around PIR54988 on UCSC Golden Path with GeneCards custom track

PIR54988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR54988 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR54988 Gene

Proteins for PIR54988 Gene

Post-translational modifications for PIR54988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR54988 Gene

Domains & Families for PIR54988 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR54988 Gene

Function for PIR54988 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR54988 Gene

Localization for PIR54988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR54988 Gene

Pathways & Interactions for PIR54988 Gene

PathCards logo

SuperPathways for PIR54988 Gene

No Data Available

Interacting Proteins for PIR54988 Gene

Gene Ontology (GO) - Biological Process for PIR54988 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR54988 Gene

Drugs & Compounds for PIR54988 Gene

No Compound Related Data Available

Transcripts for PIR54988 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR54988 Gene

No ASD Table

Relevant External Links for PIR54988 Gene

GeneLoc Exon Structure for
PIR54988

No data available for mRNA/cDNA for PIR54988 Gene

Expression for PIR54988 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR54988 Gene

Orthologs for PIR54988 Gene

No data available for Orthologs and Evolution for PIR54988 Gene

Paralogs for PIR54988 Gene

No data available for Paralogs for PIR54988 Gene

Variants for PIR54988 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR54988 Gene

Disorders for PIR54988 Gene

No disorders were found for PIR54988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR54988 Gene

Publications for PIR54988 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR54988 Gene

Products for PIR54988 Gene

Sources for PIR54988 Gene

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