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Aliases for PIR53474 Gene

Subcategory (RNA class) for PIR53474 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR53474 Gene

No Aliases found

ORGUL Members for PIR53474 Gene

Previous GeneCards Identifiers for PIR53474 Gene

  • GC19P009748

No data available for External Ids for PIR53474 Gene

Summaries for PIR53474 Gene

GeneCards Summary for PIR53474 Gene

PIR53474 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53474 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR53474 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53474 Gene

Genomics for PIR53474 Gene

GeneHancer (GH) Regulatory Elements for PIR53474 Gene

Promoters and enhancers for PIR53474 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J009638 Enhancer 0.2 FANTOM5 600.7 +0.5 459 0.3 PIR53474 ZNF561 OR7D4 ZNF846 ZNF177 OR7E24 OLFM2 ZNF559 ZNF562 ZNF426
GH19J009637 Enhancer 0.2 FANTOM5 600.7 -0.6 -599 0.3 PIR53474 ZNF846 ZNF812P UBL5 ZNF559 ZNF561-AS1
GH19J009620 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.4 -16.2 -16171 3.4 SP1 ELF3 CC2D1A ZFX SIX5 NKRF MLLT1 POLR2A GTF2F1 CSDE1 ZNF561 ZNF561-AS1 ZNF266 KRI1 FBXL12 ZNF317 PPAN ZNF558 ZNF699 ZNF121
GH19J009625 Enhancer 0.8 ENCODE 0.4 -11.9 -11892 0.2 ELF3 CC2D1A CTCF ZNF148 ZNF384 RAD21 PKNOX1 ARID2 REST RXRB ZNF846 UBL5 ZNF561-AS1 PIR53474
GH19J009627 Enhancer 0.2 Ensembl 0.4 -10.0 -9991 0.6 ZNF561 ZNF846 ZNF561-AS1 PIR53474
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53474 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53474 Gene

Genomic Locations for PIR53474 Gene
chr19:9,637,892-9,637,920
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr19:9,748,568-9,748,596
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR53474 Gene

Genes around PIR53474 on UCSC Golden Path with GeneCards custom track

PIR53474 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53474 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53474 Gene

Proteins for PIR53474 Gene

Post-translational modifications for PIR53474 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53474 Gene

Domains & Families for PIR53474 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53474 Gene

Function for PIR53474 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53474 Gene

Localization for PIR53474 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53474 Gene

Pathways & Interactions for PIR53474 Gene

PathCards logo

SuperPathways for PIR53474 Gene

No Data Available

Interacting Proteins for PIR53474 Gene

Gene Ontology (GO) - Biological Process for PIR53474 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53474 Gene

Drugs & Compounds for PIR53474 Gene

No Compound Related Data Available

Transcripts for PIR53474 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53474 Gene

No ASD Table

Relevant External Links for PIR53474 Gene

GeneLoc Exon Structure for
PIR53474

No data available for mRNA/cDNA for PIR53474 Gene

Expression for PIR53474 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53474 Gene

Orthologs for PIR53474 Gene

No data available for Orthologs and Evolution for PIR53474 Gene

Paralogs for PIR53474 Gene

No data available for Paralogs for PIR53474 Gene

Variants for PIR53474 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53474 Gene

Disorders for PIR53474 Gene

No disorders were found for PIR53474 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53474 Gene

Publications for PIR53474 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53474 Gene

Products for PIR53474 Gene

Sources for PIR53474 Gene

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