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Aliases for PIR53380 Gene

Subcategory (RNA class) for PIR53380 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR53380 Gene

No Aliases found

ORGUL Members for PIR53380 Gene

Previous GeneCards Identifiers for PIR53380 Gene

  • GC01M179627
  • GC01M179702
  • GC01M179917
  • GC01M180005
  • GC01M180160
  • GC01M179739
  • GC01M179817
  • GC01M180915
  • GC01M180079
  • GC01M180281
  • GC01M180378
  • GC01M180478
  • GC01M180568
  • GC01M180661
  • GC01M180755
  • GC01M180847

No data available for External Ids for PIR53380 Gene

Summaries for PIR53380 Gene

GeneCards Summary for PIR53380 Gene

PIR53380 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53380 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR53380

Additional gene information for PIR53380 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53380 Gene

Genomics for PIR53380 Gene

GeneHancer (GH) Regulatory Elements for PIR53380 Gene

Promoters and enhancers for PIR53380 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J179586 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 600.7 +1.7 1679 1 ZNF121 ZNF384 MAFK YY1 EGR1 GLIS2 ZBTB8A ZIC2 TARDBP CTCF LOC126860 GC01M181069 GC01M181071 GC01M181074 GC01M181075 GC01M181076 GC01M181079 GC01M181080 GC01M181081 GC01M181083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53380 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53380 Gene

Genomic Locations for PIR53380 Gene
chr1:179,587,973-179,588,004
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr1:179,557,108-179,557,139
(GRCh37/hg19)
Size:
32 bases
Orientation:
Minus strand

Genomic View for PIR53380 Gene

Genes around PIR53380 on UCSC Golden Path with GeneCards custom track

PIR53380 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53380 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR53380 Gene

ORGUL Member Location for PIR53380 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53380 Gene

Proteins for PIR53380 Gene

Post-translational modifications for PIR53380 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53380 Gene

Domains & Families for PIR53380 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53380 Gene

Function for PIR53380 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53380 Gene

Localization for PIR53380 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53380 Gene

Pathways & Interactions for PIR53380 Gene

PathCards logo

SuperPathways for PIR53380 Gene

No Data Available

Interacting Proteins for PIR53380 Gene

Gene Ontology (GO) - Biological Process for PIR53380 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53380 Gene

Drugs & Compounds for PIR53380 Gene

No Compound Related Data Available

Transcripts for PIR53380 Gene

fRNAdb Secondary structures for PIR53380 Gene

  • FR261483

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53380 Gene

No ASD Table

Relevant External Links for PIR53380 Gene

GeneLoc Exon Structure for
PIR53380

No data available for mRNA/cDNA for PIR53380 Gene

Expression for PIR53380 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53380 Gene

Orthologs for PIR53380 Gene

No data available for Orthologs and Evolution for PIR53380 Gene

Paralogs for PIR53380 Gene

No data available for Paralogs for PIR53380 Gene

Variants for PIR53380 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53380 Gene

Disorders for PIR53380 Gene

No disorders were found for PIR53380 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53380 Gene

Publications for PIR53380 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53380 Gene

Products for PIR53380 Gene

Sources for PIR53380 Gene

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