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Aliases for PIR53089 Gene

Subcategory (RNA class) for PIR53089 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR53089 Gene

No Aliases found

ORGUL Members for PIR53089 Gene

Previous GeneCards Identifiers for PIR53089 Gene

  • GC09M114982

No data available for External Ids for PIR53089 Gene

Summaries for PIR53089 Gene

GeneCards Summary for PIR53089 Gene

PIR53089 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53089 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR53089 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53089 Gene

Genomics for PIR53089 Gene

GeneHancer (GH) Regulatory Elements for PIR53089 Gene

Promoters and enhancers for PIR53089 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J112218 Enhancer 0.9 Ensembl ENCODE 600.7 -0.1 -52 1.2 MAFK RELA CREM IKZF1 IKZF2 PKNOX1 ZNF316 CBFB EED RUNX3 PIR53089 SUSD1 ENSG00000225513 RN7SL57P PTBP3
GH09J112223 Enhancer 1.1 Ensembl ENCODE 0.4 -5.8 -5773 2.1 CC2D1A ZFX ZKSCAN8 CBFA2T2 ZNF148 GTF2F1 BACH1 TRIM24 ZNF639 SMARCA4 SUSD1 ENSG00000225513 PIR53089 RN7SL57P PTBP3
GH09J112194 Enhancer 1 Ensembl ENCODE 0.3 +24.5 24461 2.6 ZKSCAN8 CSDE1 BACH1 ZNF639 SMARCA4 CAVIN1 GMEB1 ZNF740 ZNF24 GATAD2B SUSD1 ENSG00000225513 PIR53089
GH09J112178 Enhancer 1.2 ENCODE dbSUPER 0.3 +39.1 39082 3.3 ZFX CC2D1A ZKSCAN8 MNT CBFA2T2 ZNF148 MLLT1 ZNF121 CEBPG GTF2F1 SUSD1 HSDL2 ENSG00000259953 PIR53089
GH09J112233 Enhancer 0.7 Ensembl ENCODE 0.4 -14.4 -14439 2 CEBPA CEBPB TEAD1 CEBPG TEAD3 HLF CBFA2T3 SUSD1 ENSG00000225513 RN7SL57P PIR53089 PTBP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53089 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53089 Gene

Genomic Locations for PIR53089 Gene
chr9:112,219,135-112,219,162
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr9:114,981,415-114,981,442
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR53089 Gene

Genes around PIR53089 on UCSC Golden Path with GeneCards custom track

PIR53089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53089 Gene

Proteins for PIR53089 Gene

Post-translational modifications for PIR53089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53089 Gene

Domains & Families for PIR53089 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53089 Gene

Function for PIR53089 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53089 Gene

Localization for PIR53089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53089 Gene

Pathways & Interactions for PIR53089 Gene

PathCards logo

SuperPathways for PIR53089 Gene

No Data Available

Interacting Proteins for PIR53089 Gene

Gene Ontology (GO) - Biological Process for PIR53089 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53089 Gene

Drugs & Compounds for PIR53089 Gene

No Compound Related Data Available

Transcripts for PIR53089 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53089 Gene

No ASD Table

Relevant External Links for PIR53089 Gene

GeneLoc Exon Structure for
PIR53089

No data available for mRNA/cDNA for PIR53089 Gene

Expression for PIR53089 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53089 Gene

Orthologs for PIR53089 Gene

No data available for Orthologs and Evolution for PIR53089 Gene

Paralogs for PIR53089 Gene

No data available for Paralogs for PIR53089 Gene

Variants for PIR53089 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53089 Gene

Disorders for PIR53089 Gene

No disorders were found for PIR53089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53089 Gene

Publications for PIR53089 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53089 Gene

Products for PIR53089 Gene

Sources for PIR53089 Gene

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