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Aliases for PIR53087 Gene

Subcategory (RNA class) for PIR53087 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR53087 Gene

No Aliases found

ORGUL Members for PIR53087 Gene

Previous GeneCards Identifiers for PIR53087 Gene

  • GC01M023887

No data available for External Ids for PIR53087 Gene

Summaries for PIR53087 Gene

GeneCards Summary for PIR53087 Gene

PIR53087 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53087 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR53087 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53087 Gene

Genomics for PIR53087 Gene

GeneHancer (GH) Regulatory Elements for PIR53087 Gene

Promoters and enhancers for PIR53087 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J023553 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +2.0 1986 12.2 MTA3 SP1 ZNF652 ZFX ELF3 MNT CBFA2T2 ZNF148 NKRF POLR2A ID3 GC01M023559 GC01M023560 LOC105376859 PIR53087 LINC01355 SRSF10 RPL11 MDS2 E2F2
GH01J023567 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 -7.2 -7161 2.3 ZNF148 MLLT1 GTF2F1 TRIM24 CREM PRDM1 SMARCA4 MTA1 IKZF1 GMEB1 PIR53087 MDS2
GH01J023572 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.1 -15050 6.6 SP1 ZNF687 RELA CREM PRDM1 MLLT1 ZNF384 EGR1 SMARCA4 ZBED1 E2F2 ID3 MDS2 PIR53087 ENSG00000285802
GH01J023566 Enhancer 0.8 ENCODE dbSUPER 0.4 -5.2 -5239 0.2 PHF21A PKNOX1 CTCF CTBP1 NFE2 HDAC2 SMARCA5 BCOR ZNF768 CBX1 PIR53087 MDS2
GH01J023565 Enhancer 0.4 dbSUPER 0.7 -4.5 -4536 0.6 PRDM1 TRIM25 BCOR PIR53087 MDS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53087 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53087 Gene

Genomic Locations for PIR53087 Gene
chr1:23,561,178-23,561,207
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr1:23,887,668-23,887,697
(GRCh37/hg19)
Size:
30 bases
Orientation:
Minus strand

Genomic View for PIR53087 Gene

Genes around PIR53087 on UCSC Golden Path with GeneCards custom track

PIR53087 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53087 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53087 Gene

Proteins for PIR53087 Gene

Post-translational modifications for PIR53087 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53087 Gene

Domains & Families for PIR53087 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53087 Gene

Function for PIR53087 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53087 Gene

Localization for PIR53087 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53087 Gene

Pathways & Interactions for PIR53087 Gene

PathCards logo

SuperPathways for PIR53087 Gene

No Data Available

Interacting Proteins for PIR53087 Gene

Gene Ontology (GO) - Biological Process for PIR53087 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53087 Gene

Drugs & Compounds for PIR53087 Gene

No Compound Related Data Available

Transcripts for PIR53087 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53087 Gene

No ASD Table

Relevant External Links for PIR53087 Gene

GeneLoc Exon Structure for
PIR53087

No data available for mRNA/cDNA for PIR53087 Gene

Expression for PIR53087 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53087 Gene

Orthologs for PIR53087 Gene

No data available for Orthologs and Evolution for PIR53087 Gene

Paralogs for PIR53087 Gene

No data available for Paralogs for PIR53087 Gene

Variants for PIR53087 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53087 Gene

Disorders for PIR53087 Gene

No disorders were found for PIR53087 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53087 Gene

Publications for PIR53087 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53087 Gene

Products for PIR53087 Gene

Sources for PIR53087 Gene

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