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Aliases for PIR53084 Gene

Subcategory (RNA class) for PIR53084 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR53084 Gene

No Aliases found

ORGUL Members for PIR53084 Gene

Previous GeneCards Identifiers for PIR53084 Gene

  • GC12P001895

No data available for External Ids for PIR53084 Gene

Summaries for PIR53084 Gene

GeneCards Summary for PIR53084 Gene

PIR53084 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53084 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR53084 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53084 Gene

Genomics for PIR53084 Gene

GeneHancer (GH) Regulatory Elements for PIR53084 Gene

Promoters and enhancers for PIR53084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J001783 Enhancer 0.5 dbSUPER 600.7 +0.3 268 5.9 PRDM10 ZIC2 REST ZNF341 POLR2A HNF4A ATF2 PIR53084 PIR31589 ADIPOR2 CACNA2D4
GH12J001781 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -3.7 -3671 1.4 SP1 FOXA2 YY1 RAD21 HNF4A RXRA ADIPOR2 PIR53084 RPS4XP14
GH12J001775 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.9 -7871 5.4 MZF1 POLR2A ZNF600 PRDM10 JUND OSR2 ZBTB48 PKNOX1 FOS ZBTB17 ADIPOR2 CACNA2D4 PIR53084 RPS4XP14
GH12J001758 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -24.8 -24793 5.6 ELF3 CEBPG RERE SP1 HNF1A PPARG SMARCA4 KAT8 HMG20B RXRA ADIPOR2 CACNA2D4 RPS4XP14 PIR53084
GH12J001766 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -19.8 -19833 0.7 SOX13 FOXA2 TEAD1 FOXA1 NR2F6 TEAD3 SOX5 FOXA3 CACNA2D4 RPS4XP14 PIR53084 ADIPOR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53084 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53084 Gene

Genomic Locations for PIR53084 Gene
chr12:1,785,972-1,786,000
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr12:1,895,138-1,895,166
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR53084 Gene

Genes around PIR53084 on UCSC Golden Path with GeneCards custom track

PIR53084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53084 Gene

Proteins for PIR53084 Gene

Post-translational modifications for PIR53084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53084 Gene

Domains & Families for PIR53084 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53084 Gene

Function for PIR53084 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53084 Gene

Localization for PIR53084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53084 Gene

Pathways & Interactions for PIR53084 Gene

PathCards logo

SuperPathways for PIR53084 Gene

No Data Available

Interacting Proteins for PIR53084 Gene

Gene Ontology (GO) - Biological Process for PIR53084 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53084 Gene

Drugs & Compounds for PIR53084 Gene

No Compound Related Data Available

Transcripts for PIR53084 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53084 Gene

No ASD Table

Relevant External Links for PIR53084 Gene

GeneLoc Exon Structure for
PIR53084

No data available for mRNA/cDNA for PIR53084 Gene

Expression for PIR53084 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53084 Gene

Orthologs for PIR53084 Gene

No data available for Orthologs and Evolution for PIR53084 Gene

Paralogs for PIR53084 Gene

No data available for Paralogs for PIR53084 Gene

Variants for PIR53084 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53084 Gene

Disorders for PIR53084 Gene

No disorders were found for PIR53084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53084 Gene

Publications for PIR53084 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53084 Gene

Products for PIR53084 Gene

Sources for PIR53084 Gene

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