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Aliases for PIR53080 Gene

Subcategory (RNA class) for PIR53080 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR53080 Gene

No Aliases found

ORGUL Members for PIR53080 Gene

Previous GeneCards Identifiers for PIR53080 Gene

  • GC21M047060

No data available for External Ids for PIR53080 Gene

Summaries for PIR53080 Gene

GeneCards Summary for PIR53080 Gene

PIR53080 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53080 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR53080 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53080 Gene

Genomics for PIR53080 Gene

GeneHancer (GH) Regulatory Elements for PIR53080 Gene

Promoters and enhancers for PIR53080 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J045639 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 -1.6 -1636 5.5 SP1 ZNF148 NKRF ZNF687 ZSCAN21 MYC SP7 POLR2A MLLT1 IKZF1 PCBP3 PIR53080 MCM3AP
GH21J045636 Enhancer 1 Ensembl dbSUPER 0.7 +3.7 3736 0.2 ZNF473 CDC5L ZNF544 ZNF639 ZNF148 ZNF311 ZNF211 TSC22D4 ZNF266 ZNF662 ENSG00000228137 MCM3AP DIP2A MCM3AP-AS1 UBE2G2 POFUT2 COL6A1 ENSG00000227438 LINC00205 LINC01424
GH21J045634 Enhancer 1 ENCODE dbSUPER 0.4 +5.4 5353 0.9 MLLT1 ZNF680 IKZF1 CREB1 YBX1 ZNF544 IKZF2 TRIM22 ZNF747 ZNF512B ENSG00000228137 MCM3AP UBE2G2 MCM3AP-AS1 DIP2A POFUT2 COL6A1 PCBP3 S100B ENSG00000227438
GH21J045631 Enhancer 0.7 ENCODE dbSUPER 0.4 +7.8 7836 0.8 ZNF687 ZNF680 ZNF311 SCRT2 RUNX3 EBF1 GLIS1 PCBP3 ENSG00000286082 PIR53080
GH21J045628 Enhancer 0.4 Ensembl dbSUPER 0.4 +11.0 11036 1.6 PCBP3 ENSG00000286082 PIR53080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR53080 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR53080 Gene

Genomic Locations for PIR53080 Gene
chr21:45,640,210-45,640,237
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr21:47,060,124-47,060,151
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR53080 Gene

Genes around PIR53080 on UCSC Golden Path with GeneCards custom track

PIR53080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53080 Gene

Proteins for PIR53080 Gene

Post-translational modifications for PIR53080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53080 Gene

Domains & Families for PIR53080 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53080 Gene

Function for PIR53080 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53080 Gene

Localization for PIR53080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR53080 Gene

Pathways & Interactions for PIR53080 Gene

PathCards logo

SuperPathways for PIR53080 Gene

No Data Available

Interacting Proteins for PIR53080 Gene

Gene Ontology (GO) - Biological Process for PIR53080 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53080 Gene

Drugs & Compounds for PIR53080 Gene

No Compound Related Data Available

Transcripts for PIR53080 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53080 Gene

No ASD Table

Relevant External Links for PIR53080 Gene

GeneLoc Exon Structure for
PIR53080

No data available for mRNA/cDNA for PIR53080 Gene

Expression for PIR53080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53080 Gene

Orthologs for PIR53080 Gene

No data available for Orthologs and Evolution for PIR53080 Gene

Paralogs for PIR53080 Gene

No data available for Paralogs for PIR53080 Gene

Variants for PIR53080 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR53080 Gene

Disorders for PIR53080 Gene

No disorders were found for PIR53080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53080 Gene

Publications for PIR53080 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR53080 Gene

Products for PIR53080 Gene

Sources for PIR53080 Gene

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