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Aliases for PIR52979 Gene

Subcategory (RNA class) for PIR52979 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR52979 Gene

No Aliases found

ORGUL Members for PIR52979 Gene

Previous GeneCards Identifiers for PIR52979 Gene

  • GC0XP041208

No data available for External Ids for PIR52979 Gene

Summaries for PIR52979 Gene

GeneCards Summary for PIR52979 Gene

PIR52979 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52979 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52979 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52979 Gene

Genomics for PIR52979 Gene

GeneHancer (GH) Regulatory Elements for PIR52979 Gene

Promoters and enhancers for PIR52979 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ041350 Enhancer 0.8 ENCODE dbSUPER 550.7 +1.7 1683 0.2 POLR2A ZBED1 EGR1 BACH1 SCRT2 ZNF10 FOSL1 SUPT5H MYNN ZBTB33 PIR52979 DDX3X NYX
GH0XJ041354 Enhancer 0.4 UCNEbase 550.7 +0.2 168 0.2 PIR61366 PIR52979 DDX3X NYX
GH0XJ041347 Enhancer 0.4 UCNEbase 550.7 -1.0 -979 0.2 PIR61366 PIR52979 DDX3X
GH0XJ041349 Enhancer 0.4 UCNEbase 550.7 +0.5 519 0.3 PIR52979 DDX3X NYX
GH0XJ041348 Enhancer 0.4 UCNEbase 550.7 -0.7 -688 0.2 PIR61366 PIR52979 DDX3X
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR52979 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52979 Gene

Genomic Locations for PIR52979 Gene
chrX:41,349,060-41,349,088
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chrX:41,208,313-41,208,341
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR52979 Gene

Genes around PIR52979 on UCSC Golden Path with GeneCards custom track

PIR52979 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52979 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52979 Gene

Proteins for PIR52979 Gene

Post-translational modifications for PIR52979 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52979 Gene

Domains & Families for PIR52979 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52979 Gene

Function for PIR52979 Gene

Animal Model Products

miRNA for PIR52979 Gene

miRTarBase miRNAs that target PIR52979

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PIR52979 Gene

Localization for PIR52979 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52979 Gene

Pathways & Interactions for PIR52979 Gene

SuperPathways for PIR52979 Gene

No Data Available

Interacting Proteins for PIR52979 Gene

Gene Ontology (GO) - Biological Process for PIR52979 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52979 Gene

Drugs & Compounds for PIR52979 Gene

No Compound Related Data Available

Transcripts for PIR52979 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52979 Gene

No ASD Table

Relevant External Links for PIR52979 Gene

GeneLoc Exon Structure for
PIR52979

No data available for mRNA/cDNA for PIR52979 Gene

Expression for PIR52979 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52979 Gene

Orthologs for PIR52979 Gene

No data available for Orthologs and Evolution for PIR52979 Gene

Paralogs for PIR52979 Gene

No data available for Paralogs for PIR52979 Gene

Variants for PIR52979 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52979 Gene

Disorders for PIR52979 Gene

No disorders were found for PIR52979 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52979 Gene

Publications for PIR52979 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR52979 Gene

Sources for PIR52979 Gene

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