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Aliases for PIR52858 Gene

Subcategory (RNA class) for PIR52858 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR52858 Gene

No Aliases found

ORGUL Members for PIR52858 Gene

Previous GeneCards Identifiers for PIR52858 Gene

  • GC06M031502
  • GC06M031547
  • GC06M031534
  • GC06M031568
  • GC06M031587
  • GC06M031720
  • GC06M031775
  • GC06M031821
  • GC06M031871
  • GC06M031911

No data available for External Ids for PIR52858 Gene

Summaries for PIR52858 Gene

GeneCards Summary for PIR52858 Gene

PIR52858 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52858 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52858 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52858 Gene

Genomics for PIR52858 Gene

GeneHancer (GH) Regulatory Elements for PIR52858 Gene

Promoters and enhancers for PIR52858 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031534 Promoter 0.8 EPDnew 650.7 -0.9 -863 0.1 POLR2A HLF RBM22 ZBTB33 SUPT5H GC06M031536 GC06M031538 GC06M031539 GC06M031540 GC06M032005 GC06M032010 GC06M032012 GC06M032014 PIR52858 SNORD117
GH06J031528 Promoter 0.9 EPDnew 0.7 +4.8 4768 0.1 REST ZIC2 HIC1 ZNF585B POLR2A SCRT2 RBM22 ZNF423 NFKBIZ SUPT5H GC06P032275 RPL15P4 MCCD1 ZBTB12 PRR3 DXO GTF2H4 PIR52858
GH06J031529 Enhancer 0.8 ENCODE 0.7 +4.2 4192 0.3 ZNF2 DNMT3B THRB ZNF48 POLR2B E2F8 SCRT2 THAP11 MIXL1 NFKBIZ RPL15P4 MCCD1 GC06P032275 DDX39B NRM DHX16 MICA ATF6B LY6G5B LSM2
GH06J031530 Promoter 0.6 EPDnew 0.7 +3.3 3328 0.1 POLR2A MCCD1 DDX39B PIR52858 ATP6V1G2-DDX39B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR52858 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52858 Gene

Genomic Locations for PIR52858 Gene
chr6:31,533,682-31,533,711
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr6:31,501,459-31,501,488
(GRCh37/hg19)
Size:
30 bases
Orientation:
Minus strand

Genomic View for PIR52858 Gene

Genes around PIR52858 on UCSC Golden Path with GeneCards custom track

PIR52858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52858 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52858 Gene

Function for PIR52858 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52858 Gene

Localization for PIR52858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52858 Gene

Pathways & Interactions for PIR52858 Gene

SuperPathways for PIR52858 Gene

No Data Available

Interacting Proteins for PIR52858 Gene

Gene Ontology (GO) - Biological Process for PIR52858 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52858 Gene

Drugs & Compounds for PIR52858 Gene

No Compound Related Data Available

Transcripts for PIR52858 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52858 Gene

No ASD Table

Relevant External Links for PIR52858 Gene

GeneLoc Exon Structure for
PIR52858

No data available for mRNA/cDNA for PIR52858 Gene

Expression for PIR52858 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52858 Gene

Orthologs for PIR52858 Gene

No data available for Orthologs and Evolution for PIR52858 Gene

Paralogs for PIR52858 Gene

No data available for Paralogs for PIR52858 Gene

Variants for PIR52858 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52858 Gene

Disorders for PIR52858 Gene

No disorders were found for PIR52858 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52858 Gene

Publications for PIR52858 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR52858 Gene

Sources for PIR52858 Gene

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