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Aliases for PIR52833 Gene

Subcategory (RNA class) for PIR52833 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR52833 Gene

No Aliases found

ORGUL Members for PIR52833 Gene

Previous GeneCards Identifiers for PIR52833 Gene

  • GC16P053539

No data available for External Ids for PIR52833 Gene

Summaries for PIR52833 Gene

GeneCards Summary for PIR52833 Gene

PIR52833 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52833 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52833 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52833 Gene

Genomics for PIR52833 Gene

GeneHancer (GH) Regulatory Elements for PIR52833 Gene

Promoters and enhancers for PIR52833 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I053500 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 -2.0 -2013 4.9 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 AKTIP RBL2 CHD9 PIR52833 GC16M053491
GH16I053517 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.4 13419 3 HDAC1 PKNOX1 ATF1 SMAD1 ZBTB40 BATF KLF5 IRF4 ZNF121 ATF7 LOC105371268 RBL2 LOC643802 AKTIP PIR52833
GH16I053509 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +5.4 5371 2.6 PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 ZNF207 ZNF143 RBL2 LOC105371268 PIR52833
GH16I053514 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +10.2 10231 1.4 JUN CREB1 ZNF548 NR2F2 NR2C2 RBL2 CHD9 LOC105371268 PIR52833
GH16I053516 Enhancer 0.4 Ensembl dbSUPER 0.4 +11.0 11014 0.2 RBL2 LOC105371268 PIR52833
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR52833 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52833 Gene

Genomic Locations for PIR52833 Gene
chr16:53,505,287-53,505,314
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr16:53,539,199-53,539,226
(GRCh37/hg19)

Genomic View for PIR52833 Gene

Genes around PIR52833 on UCSC Golden Path with GeneCards custom track

PIR52833 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52833 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52833 Gene

Proteins for PIR52833 Gene

Post-translational modifications for PIR52833 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52833 Gene

Domains & Families for PIR52833 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52833 Gene

Function for PIR52833 Gene

Phenotypes From GWAS Catalog for PIR52833 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52833 Gene

Localization for PIR52833 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52833 Gene

Pathways & Interactions for PIR52833 Gene

SuperPathways for PIR52833 Gene

No Data Available

Interacting Proteins for PIR52833 Gene

Gene Ontology (GO) - Biological Process for PIR52833 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52833 Gene

Drugs & Compounds for PIR52833 Gene

No Compound Related Data Available

Transcripts for PIR52833 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52833 Gene

No ASD Table

Relevant External Links for PIR52833 Gene

GeneLoc Exon Structure for
PIR52833

No data available for mRNA/cDNA for PIR52833 Gene

Expression for PIR52833 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52833 Gene

Orthologs for PIR52833 Gene

No data available for Orthologs and Evolution for PIR52833 Gene

Paralogs for PIR52833 Gene

No data available for Paralogs for PIR52833 Gene

Variants for PIR52833 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52833 Gene

Disorders for PIR52833 Gene

No disorders were found for PIR52833 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52833 Gene

Publications for PIR52833 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR52833 Gene

Sources for PIR52833 Gene

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