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Aliases for PIR52561 Gene

Subcategory (RNA class) for PIR52561 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR52561 Gene

No Aliases found

ORGUL Members for PIR52561 Gene

No data available for External Ids for PIR52561 Gene

Summaries for PIR52561 Gene

GeneCards Summary for PIR52561 Gene

PIR52561 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52561 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52561 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52561 Gene

Genomics for PIR52561 Gene

GeneHancer (GH) Regulatory Elements for PIR52561 Gene

Promoters and enhancers for PIR52561 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J002383 Enhancer 0.7 FANTOM5 dbSUPER 650.7 +1.8 1789 0.2 GLIS1 GTF2A2 ZNF395 PIR52561 CFAP99 ZFYVE28 ENSG00000251148 MXD4 HAUS3 POLN SH3BP2 ENSG00000250623 TNIP2
GH04J002387 Enhancer 0.3 FANTOM5 650.7 -1.7 -1673 0.2 CEBPB PIR52561 RNF4 LOC105374353 CFAP99 ZFYVE28 ENSG00000251148 MXD4 PIR44270
GH04J002390 Enhancer 0.9 FANTOM5 dbSUPER 0.7 -4.8 -4780 0 ZNF639 RNF2 TEAD4 ZBED1 E2F5 MAX DPF2 ZIC2 ZNF395 MEF2D ZFYVE28 LOC105374353 RNF4 ENSG00000251148 MXD4 PIR44270 PIR52561
GH04J002382 Enhancer 0.7 FANTOM5 0.7 +2.8 2791 0.3 HDAC1 GTF2F1 CDC5L E4F1 FOSL1 POLR2B ZNF766 POLR2A FOXK2 EGR1 ZFYVE28 CFAP99 ENSG00000251148 MXD4 HAUS3 POLN ENSG00000250623 SH3BP2 TNIP2 PIR52561
GH04J002393 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -8.1 -8094 0.8 HDAC1 ATF1 SAP130 E4F1 CTBP1 CBX5 FOXK2 POLR2A PRDM10 ATF7 PIR44270 ZFYVE28 ENSG00000251148 MXD4 POLN HAUS3 LOC105374353 RNF4 C4orf48 NELFA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR52561 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52561 Gene

Genomic Locations for PIR52561 Gene
chr4:2,385,704-2,385,730
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr4:2,387,431-2,387,457
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR52561 Gene

Genes around PIR52561 on UCSC Golden Path with GeneCards custom track

PIR52561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52561 Gene

Function for PIR52561 Gene

Phenotypes From GWAS Catalog for PIR52561 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52561 Gene

Localization for PIR52561 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52561 Gene

Pathways & Interactions for PIR52561 Gene

SuperPathways for PIR52561 Gene

No Data Available

Interacting Proteins for PIR52561 Gene

Gene Ontology (GO) - Biological Process for PIR52561 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52561 Gene

Drugs & Compounds for PIR52561 Gene

No Compound Related Data Available

Transcripts for PIR52561 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52561 Gene

No ASD Table

Relevant External Links for PIR52561 Gene

GeneLoc Exon Structure for
PIR52561

No data available for mRNA/cDNA for PIR52561 Gene

Expression for PIR52561 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52561 Gene

Orthologs for PIR52561 Gene

No data available for Orthologs and Evolution for PIR52561 Gene

Paralogs for PIR52561 Gene

No data available for Paralogs for PIR52561 Gene

Variants for PIR52561 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52561 Gene

Disorders for PIR52561 Gene

No disorders were found for PIR52561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52561 Gene

Publications for PIR52561 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR52561 Gene

Sources for PIR52561 Gene

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