Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR52458 Gene

Subcategory (RNA class) for PIR52458 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR52458 Gene

No Aliases found

ORGUL Members for PIR52458 Gene

Previous GeneCards Identifiers for PIR52458 Gene

  • GC10P135379

No data available for External Ids for PIR52458 Gene

Summaries for PIR52458 Gene

GeneCards Summary for PIR52458 Gene

PIR52458 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52458 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52458 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52458 Gene

Genomics for PIR52458 Gene

GeneHancer (GH) Regulatory Elements for PIR52458 Gene

Promoters and enhancers for PIR52458 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I133565 Promoter 0.7 EPDnew 550.8 -0.3 -312 0.1 NRF1 ZBTB33 YY1 PIR52458 SYCE1 ENSG00000278518
GH10I133529 Enhancer 0.7 FANTOM5 0.3 -36.6 -36588 0.1 NRF1 MAX ZNF148 KLF16 POLR2A NR2C1 MYC WT1 ZBTB17 EZH2 ENSG00000278518 PRAP1 CYP2E1 FUOM ECHS1 KNDC1 PIR52458
GH10I133527 Enhancer 0.3 ENCODE 0.3 -38.0 -37954 0.2 EZH2 ENSG00000278518 CYP2E1 PIR52458
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR52458 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52458 Gene

Genomic Locations for PIR52458 Gene
chr10:133,565,886-133,565,912
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr10:135,379,390-135,379,416
(GRCh37/hg19)

Genomic View for PIR52458 Gene

Genes around PIR52458 on UCSC Golden Path with GeneCards custom track

PIR52458 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52458 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52458 Gene

Proteins for PIR52458 Gene

Post-translational modifications for PIR52458 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52458 Gene

Domains & Families for PIR52458 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52458 Gene

Function for PIR52458 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52458 Gene

Localization for PIR52458 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52458 Gene

Pathways & Interactions for PIR52458 Gene

SuperPathways for PIR52458 Gene

No Data Available

Interacting Proteins for PIR52458 Gene

Gene Ontology (GO) - Biological Process for PIR52458 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52458 Gene

Drugs & Compounds for PIR52458 Gene

No Compound Related Data Available

Transcripts for PIR52458 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52458 Gene

No ASD Table

Relevant External Links for PIR52458 Gene

GeneLoc Exon Structure for
PIR52458

No data available for mRNA/cDNA for PIR52458 Gene

Expression for PIR52458 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52458 Gene

Orthologs for PIR52458 Gene

No data available for Orthologs and Evolution for PIR52458 Gene

Paralogs for PIR52458 Gene

No data available for Paralogs for PIR52458 Gene

Variants for PIR52458 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52458 Gene

Disorders for PIR52458 Gene

No disorders were found for PIR52458 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52458 Gene

Publications for PIR52458 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR52458 Gene

Sources for PIR52458 Gene

Content
Loading form....