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Aliases for PIR52412 Gene

Subcategory (RNA class) for PIR52412 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR52412 Gene

No Aliases found

ORGUL Members for PIR52412 Gene

Previous GeneCards Identifiers for PIR52412 Gene

  • GC19M008046

No data available for External Ids for PIR52412 Gene

Summaries for PIR52412 Gene

GeneCards Summary for PIR52412 Gene

PIR52412 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52412 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52412 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52412 Gene

Genomics for PIR52412 Gene

GeneHancer (GH) Regulatory Elements for PIR52412 Gene

Promoters and enhancers for PIR52412 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J007982 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -1.9 -1918 1.9 ZIC2 POLR2A PRDM4 HNF4A ZNF664 ZKSCAN1 PIR52412 TIMM44 ENSG00000269139 GC19P007992 ELAVL1
GH19J007977 Enhancer 0.7 dbSUPER 600.7 +1.9 1863 4 SP1 SMARCA4 RXRA ZIC2 POLR2A NFE2 MAFG ZKSCAN1 RAD21 DPF2 PIR52412 TIMM44 ZNF414 ENSG00000267939 CCL25 ENSG00000269139 ENSG00000269813 ELAVL1
GH19J007986 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.5 -7497 4.5 ZIC2 JUND FOS ZFHX2 FOSL2 BATF ZNF513 GLIS1 ZNF24 POLR2A TIMM44 ENSG00000267939 GC19P007992 PIR52412 ELAVL1
GH19J007969 Enhancer 0.7 Ensembl ENCODE 0.4 +11.5 11536 0.9 POLR2A USF1 SIN3A NANOG USF2 POU5F1 ENSG00000269139 ENSG00000269813 PIR52412 ELAVL1
GH19J007970 Enhancer 0.6 ENCODE 0.4 +10.2 10212 0.2 HDGF ZNF652 CTCF RAD21 GLIS2 REST SMC3 ZSCAN23 ZNF654 ZNF143 ENSG00000269813 PIR52412 ELAVL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR52412 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52412 Gene

Genomic Locations for PIR52412 Gene
chr19:7,981,137-7,981,164
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr19:8,046,021-8,046,048
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR52412 Gene

Genes around PIR52412 on UCSC Golden Path with GeneCards custom track

PIR52412 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52412 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52412 Gene

Proteins for PIR52412 Gene

Post-translational modifications for PIR52412 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52412 Gene

Domains & Families for PIR52412 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52412 Gene

Function for PIR52412 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52412 Gene

Localization for PIR52412 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52412 Gene

Pathways & Interactions for PIR52412 Gene

PathCards logo

SuperPathways for PIR52412 Gene

No Data Available

Interacting Proteins for PIR52412 Gene

Gene Ontology (GO) - Biological Process for PIR52412 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52412 Gene

Drugs & Compounds for PIR52412 Gene

No Compound Related Data Available

Transcripts for PIR52412 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52412 Gene

No ASD Table

Relevant External Links for PIR52412 Gene

GeneLoc Exon Structure for
PIR52412

No data available for mRNA/cDNA for PIR52412 Gene

Expression for PIR52412 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52412 Gene

Orthologs for PIR52412 Gene

No data available for Orthologs and Evolution for PIR52412 Gene

Paralogs for PIR52412 Gene

No data available for Paralogs for PIR52412 Gene

Variants for PIR52412 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52412 Gene

Disorders for PIR52412 Gene

No disorders were found for PIR52412 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52412 Gene

Publications for PIR52412 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR52412 Gene

Products for PIR52412 Gene

Sources for PIR52412 Gene

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