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Aliases for PIR52122 Gene

Subcategory (RNA class) for PIR52122 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR52122 Gene

No Aliases found

ORGUL Members for PIR52122 Gene

Previous GeneCards Identifiers for PIR52122 Gene

  • GC01P021897

No data available for External Ids for PIR52122 Gene

Summaries for PIR52122 Gene

GeneCards Summary for PIR52122 Gene

PIR52122 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52122 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR52122 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52122 Gene

Genomics for PIR52122 Gene

GeneHancer (GH) Regulatory Elements for PIR52122 Gene

Promoters and enhancers for PIR52122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J043329 Enhancer 1.1 Ensembl ENCODE 600.7 +1.1 1114 2.8 ZFX CBFA2T2 ZNF121 GTF2F1 EGR1 SMARCA4 IKZF1 DPF2 PKNOX1 ZNF24 PIR52122 MED8 ENSG00000234694 CDC20 ELOVL1 HYI EBNA1BP2 CFAP57 ENSG00000229431 MPL
GH01J043327 Enhancer 0.6 Ensembl 600.7 -1.8 -1786 1 NFE2 JUND ZNF580 FOSL1 KDM1A FOS ZNF146 ZNF280D PIR52122 MED8 CDC20 ENSG00000234694 ELOVL1 EBNA1BP2 CFAP57 ENSG00000229431 TIE1
GH01J043300 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.3 -26.7 -26687 4.4 ZNF121 RXRA ZNF585B ZFHX2 BCOR WT1 RAD21 ZNF16 KLF17 HNF4A TIE1 MED8 FOXJ3 ENSG00000237950 MPL ARTN SZT2 ENSG00000229431 DMAP1 HYI
GH01J043321 Enhancer 0.7 ENCODE 0.4 -7.8 -7773 0.8 SMARCA4 CREB1 ZNF24 JUN TCF7 RCOR1 JUND MAX LEF1 MAZ MED8 ENSG00000234694 CDC20 ELOVL1 PTPRF SZT2 ENSG00000229431 PIR52122 TIE1
GH01J043323 Enhancer 0.4 dbSUPER 0.7 -4.9 -4911 1.8 SMARCA4 FOSL1 BATF TIE1 CDC20 ENSG00000234694 ELOVL1 ENSG00000229431 MED8 SZT2 PIR52122
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR52122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR52122 Gene

Genomic Locations for PIR52122 Gene
chr1:43,329,287-43,329,313
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr1:21,897,479-21,897,505
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR52122 Gene

Genes around PIR52122 on UCSC Golden Path with GeneCards custom track

PIR52122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52122 Gene

Proteins for PIR52122 Gene

Post-translational modifications for PIR52122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52122 Gene

Domains & Families for PIR52122 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52122 Gene

Function for PIR52122 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52122 Gene

Localization for PIR52122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR52122 Gene

Pathways & Interactions for PIR52122 Gene

PathCards logo

SuperPathways for PIR52122 Gene

No Data Available

Interacting Proteins for PIR52122 Gene

Gene Ontology (GO) - Biological Process for PIR52122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52122 Gene

Drugs & Compounds for PIR52122 Gene

No Compound Related Data Available

Transcripts for PIR52122 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52122 Gene

No ASD Table

Relevant External Links for PIR52122 Gene

GeneLoc Exon Structure for
PIR52122

No data available for mRNA/cDNA for PIR52122 Gene

Expression for PIR52122 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52122 Gene

Orthologs for PIR52122 Gene

No data available for Orthologs and Evolution for PIR52122 Gene

Paralogs for PIR52122 Gene

No data available for Paralogs for PIR52122 Gene

Variants for PIR52122 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR52122 Gene

Disorders for PIR52122 Gene

No disorders were found for PIR52122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52122 Gene

Publications for PIR52122 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR52122 Gene

Products for PIR52122 Gene

Sources for PIR52122 Gene

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