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Aliases for PIR51388 Gene

Subcategory (RNA class) for PIR51388 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR51388 Gene

No Aliases found

ORGUL Members for PIR51388 Gene

Previous GeneCards Identifiers for PIR51388 Gene

  • GC01M232549

No data available for External Ids for PIR51388 Gene

Summaries for PIR51388 Gene

GeneCards Summary for PIR51388 Gene

PIR51388 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR51388 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR51388 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR51388 Gene

Genomics for PIR51388 Gene

GeneHancer (GH) Regulatory Elements for PIR51388 Gene

Promoters and enhancers for PIR51388 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J232414 Enhancer 0.2 dbSUPER 600.7 -1.0 -1033 0.5 PIR51388 SIPA1L2 GC01P232625
GH01J232415 Promoter 0.5 Ensembl 0.7 -2.3 -2320 0.2 PIR51388 GC01P232625 SIPA1L2
GH01J232421 Enhancer 0.7 Ensembl dbSUPER 0.4 -10.2 -10219 0.8 ATF7 CEBPB FOS CEBPG FEZF1 ATF2 PIR51388 SIPA1L2 GC01P232625
GH01J232429 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -15.9 -15920 0.6 GATA3 PIR51388 GC01P232625 SIPA1L2
GH01J232471 Enhancer 0.9 Ensembl ENCODE 0.2 -59.9 -59898 4.2 SP7 PKNOX1 LEF1 PRDM10 ZEB2 POLR2A ATF7 ZNF692 ZNF341 ARNT PIR51388 GC01P232625 SIPA1L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR51388 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR51388 Gene

Genomic Locations for PIR51388 Gene
chr1:232,413,355-232,413,381
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr1:232,549,101-232,549,127
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR51388 Gene

Genes around PIR51388 on UCSC Golden Path with GeneCards custom track

PIR51388 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR51388 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR51388 Gene

Proteins for PIR51388 Gene

Post-translational modifications for PIR51388 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR51388 Gene

Domains & Families for PIR51388 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR51388 Gene

Function for PIR51388 Gene

Phenotypes From GWAS Catalog for PIR51388 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR51388 Gene

Localization for PIR51388 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR51388 Gene

Pathways & Interactions for PIR51388 Gene

PathCards logo

SuperPathways for PIR51388 Gene

No Data Available

Interacting Proteins for PIR51388 Gene

Gene Ontology (GO) - Biological Process for PIR51388 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR51388 Gene

Drugs & Compounds for PIR51388 Gene

No Compound Related Data Available

Transcripts for PIR51388 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR51388 Gene

No ASD Table

Relevant External Links for PIR51388 Gene

GeneLoc Exon Structure for
PIR51388

No data available for mRNA/cDNA for PIR51388 Gene

Expression for PIR51388 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR51388 Gene

Orthologs for PIR51388 Gene

No data available for Orthologs and Evolution for PIR51388 Gene

Paralogs for PIR51388 Gene

No data available for Paralogs for PIR51388 Gene

Variants for PIR51388 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR51388 Gene

Disorders for PIR51388 Gene

No disorders were found for PIR51388 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR51388 Gene

Publications for PIR51388 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR51388 Gene

Products for PIR51388 Gene

Sources for PIR51388 Gene

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