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Aliases for PIR50978 Gene

Subcategory (RNA class) for PIR50978 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR50978 Gene

No Aliases found

ORGUL Members for PIR50978 Gene

Previous GeneCards Identifiers for PIR50978 Gene

  • GC01P015327

No data available for External Ids for PIR50978 Gene

Summaries for PIR50978 Gene

GeneCards Summary for PIR50978 Gene

PIR50978 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR50978 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR50978 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR50978 Gene

Genomics for PIR50978 Gene

GeneHancer (GH) Regulatory Elements for PIR50978 Gene

Promoters and enhancers for PIR50978 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J014999 Enhancer 0.4 dbSUPER 600.7 -0.6 -627 0.9 ZNF121 CTCF RAD21 PIR50978 LOC105376759
GH01J015001 Enhancer 0.2 dbSUPER 600.7 +0.7 667 0.6 PIR50978 GC01M015029
GH01J015002 Enhancer 0.2 dbSUPER 600.7 +1.4 1404 0.5 PIR50978 GC01M015029
GH01J014994 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 -4.7 -4663 4.2 ZFX ZNF121 ZNF404 MZF1 ZNF680 EGR1 ZNF560 ZNF704 SMARCA4 GMEB1 SPEN ENSG00000237938 ZBTB17 ENSG00000178715 TMEM51-AS1 ENSG00000237301 DNAJC16 PIR50978 LOC105376759
GH01J015007 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.5 7537 2.6 ZFX MAFK ZNF316 MGA USF1 MAFG NR2F2 ZNF592 MAFF EMSY PIR50978 GC01M015029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR50978 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR50978 Gene

Genomic Locations for PIR50978 Gene
chr1:15,000,964-15,000,990
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr1:15,327,460-15,327,486
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR50978 Gene

Genes around PIR50978 on UCSC Golden Path with GeneCards custom track

PIR50978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR50978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR50978 Gene

Proteins for PIR50978 Gene

Post-translational modifications for PIR50978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR50978 Gene

Domains & Families for PIR50978 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR50978 Gene

Function for PIR50978 Gene

Phenotypes From GWAS Catalog for PIR50978 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR50978 Gene

Localization for PIR50978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR50978 Gene

Pathways & Interactions for PIR50978 Gene

PathCards logo

SuperPathways for PIR50978 Gene

No Data Available

Interacting Proteins for PIR50978 Gene

Gene Ontology (GO) - Biological Process for PIR50978 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR50978 Gene

Drugs & Compounds for PIR50978 Gene

No Compound Related Data Available

Transcripts for PIR50978 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR50978 Gene

No ASD Table

Relevant External Links for PIR50978 Gene

GeneLoc Exon Structure for
PIR50978

No data available for mRNA/cDNA for PIR50978 Gene

Expression for PIR50978 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR50978 Gene

Orthologs for PIR50978 Gene

No data available for Orthologs and Evolution for PIR50978 Gene

Paralogs for PIR50978 Gene

No data available for Paralogs for PIR50978 Gene

Variants for PIR50978 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR50978 Gene

Disorders for PIR50978 Gene

No disorders were found for PIR50978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR50978 Gene

Publications for PIR50978 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR50978 Gene

Products for PIR50978 Gene

Sources for PIR50978 Gene

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