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Aliases for PIR50839 Gene

Subcategory (RNA class) for PIR50839 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR50839 Gene

No Aliases found

ORGUL Members for PIR50839 Gene

No data available for External Ids for PIR50839 Gene

Summaries for PIR50839 Gene

GeneCards Summary for PIR50839 Gene

PIR50839 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR50839 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR50839 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR50839 Gene

Genomics for PIR50839 Gene

GeneHancer (GH) Regulatory Elements for PIR50839 Gene

Promoters and enhancers for PIR50839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026283 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.4 381 3.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 HIST1H4H PIR54542 LOC105374985 PIR40221 PIR50839 TRX-CAT1-2 ABT1 BTN2A3P HMGN4 BTN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR50839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR50839 Gene

Genomic Locations for PIR50839 Gene
chr6:26,285,461-26,285,488
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr6:26,285,689-26,285,716
(GRCh37/hg19)

Genomic View for PIR50839 Gene

Genes around PIR50839 on UCSC Golden Path with GeneCards custom track

PIR50839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR50839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR50839 Gene

Function for PIR50839 Gene

Phenotypes From GWAS Catalog for PIR50839 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR50839 Gene

Localization for PIR50839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR50839 Gene

Pathways & Interactions for PIR50839 Gene

SuperPathways for PIR50839 Gene

No Data Available

Interacting Proteins for PIR50839 Gene

Gene Ontology (GO) - Biological Process for PIR50839 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR50839 Gene

Drugs & Compounds for PIR50839 Gene

No Compound Related Data Available

Transcripts for PIR50839 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR50839 Gene

No ASD Table

Relevant External Links for PIR50839 Gene

GeneLoc Exon Structure for
PIR50839

No data available for mRNA/cDNA for PIR50839 Gene

Expression for PIR50839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR50839 Gene

Orthologs for PIR50839 Gene

No data available for Orthologs and Evolution for PIR50839 Gene

Paralogs for PIR50839 Gene

No data available for Paralogs for PIR50839 Gene

Variants for PIR50839 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR50839 Gene

Disorders for PIR50839 Gene

No disorders were found for PIR50839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR50839 Gene

Publications for PIR50839 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR50839 Gene

Sources for PIR50839 Gene

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