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Aliases for PIR50058 Gene

Subcategory (RNA class) for PIR50058 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR50058 Gene

No Aliases found

ORGUL Members for PIR50058 Gene

Previous GeneCards Identifiers for PIR50058 Gene

  • GC22M024348
  • GC22M024518
  • GC22M024789
  • GC22M024975
  • GC22M025228
  • GC22M024047
  • GC22M024209
  • GC22M026928
  • GC22M025291
  • GC22M025515
  • GC22M025694
  • GC22M025881
  • GC22M026065
  • GC22M026247
  • GC22M026432
  • GC22M026726

No data available for External Ids for PIR50058 Gene

Summaries for PIR50058 Gene

GeneCards Summary for PIR50058 Gene

PIR50058 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR50058 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR50058

Additional gene information for PIR50058 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR50058 Gene

Genomics for PIR50058 Gene

GeneHancer (GH) Regulatory Elements for PIR50058 Gene

Promoters and enhancers for PIR50058 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J023892 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.4 -1440 4.7 HDGF SP1 ZFX CTCF ELF3 MNT ZNF148 NKRF POLR2A CEBPG GC22M026980 GC22M026982 GC22M026986 GC22M026989 GC22M026991 GC22M026992 GC22M027000 GC22M027001 GC22M027003 GC22M027006
GH22J023893 Enhancer 0.7 FANTOM5 dbSUPER 600.7 +1.4 1390 0.1 TRIM28 ZNF184 HLTF ZNF626 ZNF280D GC22M027001 GC22M027008 GC22M027045 PIR32728 PIR54923 PIR33169 PIR33222 PIR50058 PIR34008 PIR39941
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR50058 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR50058 Gene

Genomic Locations for PIR50058 Gene
chr22:23,893,717-23,893,749
(GRCh38/hg38)
Size:
33 bases
Orientation:
Minus strand
chr22:24,235,904-24,235,936
(GRCh37/hg19)
Size:
33 bases
Orientation:
Minus strand

Genomic View for PIR50058 Gene

Genes around PIR50058 on UCSC Golden Path with GeneCards custom track

PIR50058 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR50058 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR50058 Gene

ORGUL Member Location for PIR50058 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR50058 Gene

Proteins for PIR50058 Gene

Post-translational modifications for PIR50058 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR50058 Gene

Domains & Families for PIR50058 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR50058 Gene

Function for PIR50058 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR50058 Gene

Localization for PIR50058 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR50058 Gene

Pathways & Interactions for PIR50058 Gene

PathCards logo

SuperPathways for PIR50058 Gene

No Data Available

Interacting Proteins for PIR50058 Gene

Gene Ontology (GO) - Biological Process for PIR50058 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR50058 Gene

Drugs & Compounds for PIR50058 Gene

No Compound Related Data Available

Transcripts for PIR50058 Gene

fRNAdb Secondary structures for PIR50058 Gene

  • FR099616

Alternative Splicing Database (ASD) splice patterns (SP) for PIR50058 Gene

No ASD Table

Relevant External Links for PIR50058 Gene

GeneLoc Exon Structure for
PIR50058

No data available for mRNA/cDNA for PIR50058 Gene

Expression for PIR50058 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR50058 Gene

Orthologs for PIR50058 Gene

No data available for Orthologs and Evolution for PIR50058 Gene

Paralogs for PIR50058 Gene

No data available for Paralogs for PIR50058 Gene

Variants for PIR50058 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR50058 Gene

Disorders for PIR50058 Gene

No disorders were found for PIR50058 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR50058 Gene

Publications for PIR50058 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR50058 Gene

Products for PIR50058 Gene

Sources for PIR50058 Gene

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