Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR50030 Gene

Subcategory (RNA class) for PIR50030 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR50030 Gene

No Aliases found

ORGUL Members for PIR50030 Gene

Previous GeneCards Identifiers for PIR50030 Gene

  • GC0XM109235
  • GC02M224581

No data available for External Ids for PIR50030 Gene

Summaries for PIR50030 Gene

GeneCards Summary for PIR50030 Gene

PIR50030 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR50030 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR50030 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR50030 Gene

Genomics for PIR50030 Gene

GeneHancer (GH) Regulatory Elements for PIR50030 Gene

Promoters and enhancers for PIR50030 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J223714 Enhancer 0.2 Ensembl 600.7 +0.8 782 0.2 PIR50030 LOC646696
GH02J223723 Enhancer 0.9 ENCODE 0.4 -10.3 -10313 4 SP1 ELF3 CTCF MLLT1 GTF2F1 CSDE1 BACH1 SP7 ELF1 POLR2A KCNE4 PIR50030 AP1S3
GH02J223796 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -84.1 -84149 6.9 CTCF MAFK RAD21 ARID2 PRDM10 IKZF2 REST ZSCAN4 ATF7 ZNF692 AP1S3 WDFY1 MRPL44 PIR50030 ENSG00000286239
GH02J223835 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.1 -121.7 -121685 3.1 ZNF652 SP1 NKRF POLR2A ZNF121 ZNF24 RELA SP5 CREM PRDM1 AP1S3 WDFY1 ENSG00000228446 MRPL44 ENSG00000286239 PIR50030
GH02J223758 Enhancer 0.9 ENCODE 0.3 -44.8 -44798 3.8 ELF3 CEBPG ZSCAN21 NCOA3 MAFK TFE3 SP7 PPARG SP5 ZNF384 PIR50030 AP1S3 ENSG00000286239
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR50030 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR50030 Gene

Genomic Locations for PIR50030 Gene
chr2:223,715,453-223,715,483
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr2:224,580,170-224,580,200
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR50030 Gene

Genes around PIR50030 on UCSC Golden Path with GeneCards custom track

PIR50030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR50030 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR50030 Gene

ORGUL Member Location for PIR50030 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR50030 Gene

Proteins for PIR50030 Gene

Post-translational modifications for PIR50030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR50030 Gene

Domains & Families for PIR50030 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR50030 Gene

Function for PIR50030 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR50030 Gene

Localization for PIR50030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR50030 Gene

Pathways & Interactions for PIR50030 Gene

PathCards logo

SuperPathways for PIR50030 Gene

No Data Available

Interacting Proteins for PIR50030 Gene

Gene Ontology (GO) - Biological Process for PIR50030 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR50030 Gene

Drugs & Compounds for PIR50030 Gene

No Compound Related Data Available

Transcripts for PIR50030 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR50030 Gene

No ASD Table

Relevant External Links for PIR50030 Gene

GeneLoc Exon Structure for
PIR50030

No data available for mRNA/cDNA for PIR50030 Gene

Expression for PIR50030 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR50030 Gene

Orthologs for PIR50030 Gene

No data available for Orthologs and Evolution for PIR50030 Gene

Paralogs for PIR50030 Gene

No data available for Paralogs for PIR50030 Gene

Variants for PIR50030 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR50030 Gene

Disorders for PIR50030 Gene

No disorders were found for PIR50030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR50030 Gene

Publications for PIR50030 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR50030 Gene

Products for PIR50030 Gene

Sources for PIR50030 Gene

Content
Loading form....