Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR49430 Gene

Subcategory (RNA class) for PIR49430 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR49430 Gene

No Aliases found

ORGUL Members for PIR49430 Gene

No data available for External Ids for PIR49430 Gene

Summaries for PIR49430 Gene

GeneCards Summary for PIR49430 Gene

PIR49430 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49430 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR49430

Additional gene information for PIR49430 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49430 Gene

Genomics for PIR49430 Gene

GeneHancer (GH) Regulatory Elements for PIR49430 Gene

Promoters and enhancers for PIR49430 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I007850 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 -0.9 -892 1.6 FOXA2 ARID4B KLF17 SIN3A BMI1 YY1 GLIS2 ZNF213 ZNF143 EGR2 C5orf49 PIR49430 MTRR GC05P007853 ENSG00000250761
GH05I007851 Enhancer 0.7 ENCODE 550.8 +0.0 12 0.2 PKNOX1 FOXA2 MAX SIN3A YY1 GATA3 GATAD2A SMARCE1 ZNF687 RXRA MTRR PIR49430 GC05P007853 C5orf49 FASTKD3
GH05I007852 Enhancer 0.6 ENCODE 550.8 +0.3 295 0.2 SMARCE1 PKNOX1 ZNF687 SIN3A DPF2 ELF1 YY1 ZNF335 JUND GATA3 MTRR PIR49430 GC05P007853 C5orf49 FASTKD3
GH05I007853 Enhancer 0.5 ENCODE 550.8 -1.8 -1828 0.2 ZNF202 CTCF KLF1 GLIS2 SAP130 SIN3A EZH2 GC05P007853 MTRR PIR49430 C5orf49 ENSG00000250761
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49430 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49430 Gene

Genomic Locations for PIR49430 Gene
chr5:7,851,911-7,851,941
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr5:7,852,024-7,852,054
(GRCh37/hg19)

Genomic View for PIR49430 Gene

Genes around PIR49430 on UCSC Golden Path with GeneCards custom track

PIR49430 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49430 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR49430 Gene

ORGUL Member Location for PIR49430 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49430 Gene

Proteins for PIR49430 Gene

Post-translational modifications for PIR49430 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49430 Gene

Domains & Families for PIR49430 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49430 Gene

Function for PIR49430 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49430 Gene

Localization for PIR49430 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49430 Gene

Pathways & Interactions for PIR49430 Gene

SuperPathways for PIR49430 Gene

No Data Available

Interacting Proteins for PIR49430 Gene

Gene Ontology (GO) - Biological Process for PIR49430 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49430 Gene

Drugs & Compounds for PIR49430 Gene

No Compound Related Data Available

Transcripts for PIR49430 Gene

fRNAdb Secondary structures for PIR49430 Gene

  • FR103246

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49430 Gene

No ASD Table

Relevant External Links for PIR49430 Gene

GeneLoc Exon Structure for
PIR49430

No data available for mRNA/cDNA for PIR49430 Gene

Expression for PIR49430 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49430 Gene

Orthologs for PIR49430 Gene

No data available for Orthologs and Evolution for PIR49430 Gene

Paralogs for PIR49430 Gene

No data available for Paralogs for PIR49430 Gene

Variants for PIR49430 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49430 Gene

Disorders for PIR49430 Gene

No disorders were found for PIR49430 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49430 Gene

Publications for PIR49430 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49430 Gene

Sources for PIR49430 Gene

Content
Loading form....