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Aliases for PIR49404 Gene

Subcategory (RNA class) for PIR49404 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR49404 Gene

No Aliases found

ORGUL Members for PIR49404 Gene

Previous GeneCards Identifiers for PIR49404 Gene

  • GC17P042984

No data available for External Ids for PIR49404 Gene

Summaries for PIR49404 Gene

GeneCards Summary for PIR49404 Gene

PIR49404 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49404 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR49404

Additional gene information for PIR49404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49404 Gene

Genomics for PIR49404 Gene

GeneHancer (GH) Regulatory Elements for PIR49404 Gene

Promoters and enhancers for PIR49404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I044904 Enhancer 1.1 Ensembl ENCODE 550.8 -1.3 -1286 3 ATF1 TCF12 GATA2 FOS ATF7 NCOA1 ZNF592 MBD2 MEF2D ATF4 GC17M044904 GC17P044905 GC17P044908 PIR49404 EFTUD2 FAM187A UBTF ASB16-AS1 CCDC103 GFAP
GH17I044909 Enhancer 0.4 ENCODE 0.8 +2.3 2284 1.3 POLR2A ZNF366 ZNF600 GC17M044910 EFTUD2 GJC1 ENSG00000267505 GC17P044908 PIR49404 GFAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49404 Gene

Genomic Locations for PIR49404 Gene
chr17:44,907,562-44,907,592
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr17:42,984,930-42,984,960
(GRCh37/hg19)

Genomic View for PIR49404 Gene

Genes around PIR49404 on UCSC Golden Path with GeneCards custom track

PIR49404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR49404 Gene

ORGUL Member Location for PIR49404 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49404 Gene

Proteins for PIR49404 Gene

Post-translational modifications for PIR49404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49404 Gene

Domains & Families for PIR49404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49404 Gene

Function for PIR49404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49404 Gene

Localization for PIR49404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49404 Gene

Pathways & Interactions for PIR49404 Gene

SuperPathways for PIR49404 Gene

No Data Available

Interacting Proteins for PIR49404 Gene

Gene Ontology (GO) - Biological Process for PIR49404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49404 Gene

Drugs & Compounds for PIR49404 Gene

No Compound Related Data Available

Transcripts for PIR49404 Gene

fRNAdb Secondary structures for PIR49404 Gene

  • FR267558

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49404 Gene

No ASD Table

Relevant External Links for PIR49404 Gene

GeneLoc Exon Structure for
PIR49404

No data available for mRNA/cDNA for PIR49404 Gene

Expression for PIR49404 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49404 Gene

Orthologs for PIR49404 Gene

No data available for Orthologs and Evolution for PIR49404 Gene

Paralogs for PIR49404 Gene

No data available for Paralogs for PIR49404 Gene

Variants for PIR49404 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49404 Gene

Disorders for PIR49404 Gene

No disorders were found for PIR49404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49404 Gene

Publications for PIR49404 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49404 Gene

Sources for PIR49404 Gene

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