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Aliases for PIR49400 Gene

Subcategory (RNA class) for PIR49400 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49400 Gene

No Aliases found

ORGUL Members for PIR49400 Gene

No data available for External Ids for PIR49400 Gene

Summaries for PIR49400 Gene

GeneCards Summary for PIR49400 Gene

PIR49400 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49400 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49400 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49400 Gene

Genomics for PIR49400 Gene

GeneHancer (GH) Regulatory Elements for PIR49400 Gene

Promoters and enhancers for PIR49400 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I015256 Enhancer 0.5 ENCODE dbSUPER 550.8 -1.2 -1188 0.7 POLR2A PIR49400 CAPN7 COL6A4P1 RBSN SH3BP5-AS1 SH3BP5
GH03I015267 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.4 +12.9 12901 6.3 HDGF HNRNPUL1 PKNOX1 ARNT SIN3A IRF4 POLR2B CBX5 ZNF207 ZNF143 SH3BP5 CCDC174 SH3BP5-AS1 CAPN7 NR2C2 RNU6-454P COL6A4P1 RNU6-1024P RBSN FGD5-AS1
GH03I015287 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +34.3 34300 10.9 HNRNPUL1 PKNOX1 CLOCK ATF1 NEUROD1 SIN3A BRCA1 YY1 TCF12 GATA2 SH3BP5 CAPN7 CCDC174 EAF1 NR2C2 RPS24P10 SH3BP5-AS1 RNU6-454P COL6A4P1 RNU6-1024P
GH03I015323 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.2 +70.6 70604 11.1 HDGF PKNOX1 CLOCK FOXA2 SIN3A FEZF1 ZBTB7B IRF4 YY1 ZNF143 SH3BP5 RBSN SH3BP5-AS1 CCDC174 METTL6 NR2C2 ENSG00000270409 CAPN7 HACL1 RPS3AP53
GH03I015274 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +17.6 17560 2 HDGF HDAC1 ATF1 NFRKB ZNF766 E2F8 ATF7 CEBPB NCOA1 ZEB2 SH3BP5 RNU6-454P CAPN7 COL6A4P1 RNU6-1024P SH3BP5-AS1 PIR49400 GC03P015339
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49400 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49400 Gene

Genomic Locations for PIR49400 Gene
chr3:15,258,152-15,258,180
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr3:15,299,659-15,299,687
(GRCh37/hg19)

Genomic View for PIR49400 Gene

Genes around PIR49400 on UCSC Golden Path with GeneCards custom track

PIR49400 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49400 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49400 Gene

Proteins for PIR49400 Gene

Post-translational modifications for PIR49400 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49400 Gene

Domains & Families for PIR49400 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49400 Gene

Function for PIR49400 Gene

Phenotypes From GWAS Catalog for PIR49400 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49400 Gene

Localization for PIR49400 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49400 Gene

Pathways & Interactions for PIR49400 Gene

SuperPathways for PIR49400 Gene

No Data Available

Interacting Proteins for PIR49400 Gene

Gene Ontology (GO) - Biological Process for PIR49400 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49400 Gene

Drugs & Compounds for PIR49400 Gene

No Compound Related Data Available

Transcripts for PIR49400 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49400 Gene

No ASD Table

Relevant External Links for PIR49400 Gene

GeneLoc Exon Structure for
PIR49400

No data available for mRNA/cDNA for PIR49400 Gene

Expression for PIR49400 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49400 Gene

Orthologs for PIR49400 Gene

No data available for Orthologs and Evolution for PIR49400 Gene

Paralogs for PIR49400 Gene

No data available for Paralogs for PIR49400 Gene

Variants for PIR49400 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49400 Gene

Disorders for PIR49400 Gene

No disorders were found for PIR49400 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49400 Gene

Publications for PIR49400 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49400 Gene

Sources for PIR49400 Gene

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