Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR49393 Gene

Subcategory (RNA class) for PIR49393 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49393 Gene

No Aliases found

ORGUL Members for PIR49393 Gene

Previous GeneCards Identifiers for PIR49393 Gene

  • GC14M065264

No data available for External Ids for PIR49393 Gene

Summaries for PIR49393 Gene

GeneCards Summary for PIR49393 Gene

PIR49393 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49393 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49393 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49393 Gene

Genomics for PIR49393 Gene

GeneHancer (GH) Regulatory Elements for PIR49393 Gene

Promoters and enhancers for PIR49393 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I064822 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.3 -28.4 -28424 7.9 PKNOX1 SIN3A ZNF2 IRF4 ZNF48 RAD21 TCF12 GLIS2 ARID2 ZNF143 SPTB CHURC1 RPPH1-2P CHURC1-FNTB GPX2 RAB15 PIR49393 GC14M064872
GH14I064800 Enhancer 0.6 ENCODE 0.8 -2.5 -2452 0.1 CTCF TEAD1 RAD21 RFX5 TEAD3 ZNF217 SMC3 ZNF444 RPPH1-2P CHURC1 CHURC1-FNTB GPX2 PIR49393 GC14M064872 SPTB
GH14I064805 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.0 -8982 2 REST DPF2 MNT FOXA1 SP1 CTBP1 JUND ZNF512B ATF3 POLR2A CHURC1 SPTB PIR49393 GC14M064872
GH14I064812 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -15.0 -14989 0.9 GLIS1 ZNF629 ZNF10 CREB1 WT1 RPPH1-2P CHURC1 CHURC1-FNTB GPX2 PPP1R36 PIR49393 GC14M064872 SPTB
GH14I064840 Enhancer 1.1 ENCODE dbSUPER 0.3 -43.8 -43827 2.8 HDGF PKNOX1 TCF12 ZNF766 GATA2 E2F8 ZNF143 FOS NCOA1 ZNF592 CHURC1 SPTB GC14M064872 PIR49393
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49393 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49393 Gene

Genomic Locations for PIR49393 Gene
chr14:64,797,728-64,797,756
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr14:65,264,446-65,264,474
(GRCh37/hg19)

Genomic View for PIR49393 Gene

Genes around PIR49393 on UCSC Golden Path with GeneCards custom track

PIR49393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49393 Gene

Proteins for PIR49393 Gene

Post-translational modifications for PIR49393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49393 Gene

Domains & Families for PIR49393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49393 Gene

Function for PIR49393 Gene

Phenotypes From GWAS Catalog for PIR49393 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49393 Gene

Localization for PIR49393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49393 Gene

Pathways & Interactions for PIR49393 Gene

SuperPathways for PIR49393 Gene

No Data Available

Interacting Proteins for PIR49393 Gene

Gene Ontology (GO) - Biological Process for PIR49393 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49393 Gene

Drugs & Compounds for PIR49393 Gene

No Compound Related Data Available

Transcripts for PIR49393 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49393 Gene

No ASD Table

Relevant External Links for PIR49393 Gene

GeneLoc Exon Structure for
PIR49393

No data available for mRNA/cDNA for PIR49393 Gene

Expression for PIR49393 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49393 Gene

Orthologs for PIR49393 Gene

No data available for Orthologs and Evolution for PIR49393 Gene

Paralogs for PIR49393 Gene

No data available for Paralogs for PIR49393 Gene

Variants for PIR49393 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49393 Gene

Disorders for PIR49393 Gene

No disorders were found for PIR49393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49393 Gene

Publications for PIR49393 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49393 Gene

Sources for PIR49393 Gene

Content
Loading form....