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Aliases for PIR49345 Gene

Subcategory (RNA class) for PIR49345 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49345 Gene

No Aliases found

ORGUL Members for PIR49345 Gene

No data available for External Ids for PIR49345 Gene

Summaries for PIR49345 Gene

GeneCards Summary for PIR49345 Gene

PIR49345 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49345 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49345 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49345 Gene

Genomics for PIR49345 Gene

GeneHancer (GH) Regulatory Elements for PIR49345 Gene

Promoters and enhancers for PIR49345 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I030555 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 -3.6 -3570 4.2 ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC ZNF764 ENSG00000260869 FUS SETD1A ZNF785 SRCAP ENSG00000260114 TAOK2 INO80E SMG1P2
GH16I030550 Enhancer 1 Ensembl ENCODE dbSUPER 0.8 +2.1 2106 2.9 BCOR HDAC1 PKNOX1 L3MBTL2 NR2F1 MTA3 GATA3 POLR2A IKZF1 PRDM1 ZNF688 ZNF785 DCTPP1 ZNF689 SEPHS2 ITGAL ENSG00000222701 CD2BP2 ENSG00000235560 PIR49345
GH16I030538 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +13.1 13099 5.3 PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 ZNF48 TCF12 ZNF121 ZNF213 ZNF764 ZNF785 INO80E ENSG00000235560 SRCAP SMG1P2 ENSG00000260267 SMG1P5 ENSG00000260304 ENSG00000260114
GH16I030547 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +5.5 5528 2.4 PKNOX1 ATF1 ARNT FEZF1 GLI4 ZNF2 TCF12 FOS ATF7 NCOA1 ZNF689 ZNF764 SETD1A ENSG00000239791 ZNF688 ZNF785 DCTPP1 ITGAL ENSG00000222701 SEPHS2
GH16I030546 Enhancer 0.3 Ensembl 0.4 +8.0 8000 0.6 MLLT1 DCTPP1 ENSG00000222701 ITGAL SEPHS2 ZNF689 TBC1D10B LOC730183 LOC100127965 PIR49345 ENSG00000260869
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49345 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49345 Gene

Genomic Locations for PIR49345 Gene
chr16:30,554,472-30,554,501
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr16:30,565,793-30,565,822
(GRCh37/hg19)

Genomic View for PIR49345 Gene

Genes around PIR49345 on UCSC Golden Path with GeneCards custom track

PIR49345 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49345 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49345 Gene

Proteins for PIR49345 Gene

Post-translational modifications for PIR49345 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49345 Gene

Domains & Families for PIR49345 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49345 Gene

Function for PIR49345 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49345 Gene

Localization for PIR49345 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49345 Gene

Pathways & Interactions for PIR49345 Gene

SuperPathways for PIR49345 Gene

No Data Available

Interacting Proteins for PIR49345 Gene

Gene Ontology (GO) - Biological Process for PIR49345 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49345 Gene

Drugs & Compounds for PIR49345 Gene

No Compound Related Data Available

Transcripts for PIR49345 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49345 Gene

No ASD Table

Relevant External Links for PIR49345 Gene

GeneLoc Exon Structure for
PIR49345

No data available for mRNA/cDNA for PIR49345 Gene

Expression for PIR49345 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49345 Gene

Orthologs for PIR49345 Gene

No data available for Orthologs and Evolution for PIR49345 Gene

Paralogs for PIR49345 Gene

No data available for Paralogs for PIR49345 Gene

Variants for PIR49345 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49345 Gene

Disorders for PIR49345 Gene

No disorders were found for PIR49345 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49345 Gene

Publications for PIR49345 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49345 Gene

Sources for PIR49345 Gene

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