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Aliases for PIR49257 Gene

Subcategory (RNA class) for PIR49257 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR49257 Gene

No Aliases found

ORGUL Members for PIR49257 Gene

Previous GeneCards Identifiers for PIR49257 Gene

  • GC20M055858

No data available for External Ids for PIR49257 Gene

Summaries for PIR49257 Gene

GeneCards Summary for PIR49257 Gene

PIR49257 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49257 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR49257

Additional gene information for PIR49257 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49257 Gene

Genomics for PIR49257 Gene

GeneHancer (GH) Regulatory Elements for PIR49257 Gene

Promoters and enhancers for PIR49257 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I057282 Enhancer 0.2 ENCODE 550.8 +0.2 221 1 GC20M057284 PIR49257 BMP7 SPO11 RPL39P39 PCK1 ENSG00000226308 LOC105372687
GH20I057268 Enhancer 0.8 ENCODE 0.4 +16.3 16298 0.2 ZSCAN5A ZBTB6 KLF17 ZNF76 ZIC2 HIC1 ZNF335 ZFHX2 GLIS2 PATZ1 BMP7 ENSG00000226308 GC20M057284 PIR49257
GH20I057305 Enhancer 1 FANTOM5 ENCODE 0.3 -22.6 -22566 0.2 SIX4 PKNOX1 ESRRA NFIB ZNF449 SIN3A BMI1 ZBTB7B MTA3 CTBP1 RPL39P39 SPO11 BMP7 GC20P057313 PIR49257 GC20M057284 LOC105372687
GH20I057267 Enhancer 0.6 ENCODE 0.4 +16.1 16148 0.1 ZSCAN5A REST ZEB2 ZNF335 GLIS2 PATZ1 ZNF341 ZNF24 BCLAF1 PRDM4 BMP7 ENSG00000226308 GC20M057284 PIR49257
GH20I057308 Enhancer 0.7 ENCODE 0.3 -25.7 -25742 0.2 GTF2F1 ESRRA MAX ZBTB7B RFX5 FOSL1 CTBP1 GATA3 POLR2A FOSL2 GC20P057313 GC20M057284 PIR49257 LOC105372687
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49257 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49257 Gene

Genomic Locations for PIR49257 Gene
chr20:57,283,247-57,283,278
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr20:55,858,303-55,858,334
(GRCh37/hg19)

Genomic View for PIR49257 Gene

Genes around PIR49257 on UCSC Golden Path with GeneCards custom track

PIR49257 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49257 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR49257 Gene

ORGUL Member Location for PIR49257 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49257 Gene

Proteins for PIR49257 Gene

Post-translational modifications for PIR49257 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49257 Gene

Domains & Families for PIR49257 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49257 Gene

Function for PIR49257 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49257 Gene

Localization for PIR49257 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49257 Gene

Pathways & Interactions for PIR49257 Gene

SuperPathways for PIR49257 Gene

No Data Available

Interacting Proteins for PIR49257 Gene

Gene Ontology (GO) - Biological Process for PIR49257 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49257 Gene

Drugs & Compounds for PIR49257 Gene

No Compound Related Data Available

Transcripts for PIR49257 Gene

fRNAdb Secondary structures for PIR49257 Gene

  • FR274997

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49257 Gene

No ASD Table

Relevant External Links for PIR49257 Gene

GeneLoc Exon Structure for
PIR49257

No data available for mRNA/cDNA for PIR49257 Gene

Expression for PIR49257 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49257 Gene

Orthologs for PIR49257 Gene

No data available for Orthologs and Evolution for PIR49257 Gene

Paralogs for PIR49257 Gene

No data available for Paralogs for PIR49257 Gene

Variants for PIR49257 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49257 Gene

Disorders for PIR49257 Gene

No disorders were found for PIR49257 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49257 Gene

Publications for PIR49257 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49257 Gene

Sources for PIR49257 Gene

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