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Aliases for PIR49239 Gene

Subcategory (RNA class) for PIR49239 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49239 Gene

No Aliases found

ORGUL Members for PIR49239 Gene

No data available for External Ids for PIR49239 Gene

Summaries for PIR49239 Gene

GeneCards Summary for PIR49239 Gene

PIR49239 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49239 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49239 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49239 Gene

Genomics for PIR49239 Gene

GeneHancer (GH) Regulatory Elements for PIR49239 Gene

Promoters and enhancers for PIR49239 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I014820 Enhancer 0.4 dbSUPER 550.8 +0.7 656 1.7 RNF2 ZNF133 PIR49239 FGD5 LOC105376963
GH03I014822 Enhancer 0.8 Ensembl dbSUPER 0.8 +3.0 2962 1.2 SMARCE1 SCRT1 ZNF10 ZNF223 ZIC2 FOXA1 GATA3 JUND POLR2A SCRT2 C3orf20 PIR49239 FGD5 LOC105376963
GH03I014836 Enhancer 1.1 ENCODE dbSUPER 0.4 +15.9 15871 0.2 ATF1 TCF12 ATF7 NCOA1 REST ZNF592 SREBF1 ATF4 GMEB1 ZNF184 PIR49239 FGD5 LOC105376963
GH03I014839 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +17.4 17350 1.4 HNF4A PPARG NR2F2 EZH2 SP7 ENSG00000230172 C3orf20 TMEM43 PIR49239 FGD5 LOC105376963
GH03I014837 Enhancer 0.9 ENCODE dbSUPER 0.4 +16.1 16127 0.2 HDAC1 E4F1 FOSL1 MTA3 POLR2A FOXK2 NR2F6 RFX1 RNF2 SOX6 PIR49239 FGD5 LOC105376963
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49239 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49239 Gene

Genomic Locations for PIR49239 Gene
chr3:14,820,438-14,820,465
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr3:14,861,945-14,861,972
(GRCh37/hg19)

Genomic View for PIR49239 Gene

Genes around PIR49239 on UCSC Golden Path with GeneCards custom track

PIR49239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49239 Gene

Proteins for PIR49239 Gene

Post-translational modifications for PIR49239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49239 Gene

Domains & Families for PIR49239 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49239 Gene

Function for PIR49239 Gene

Phenotypes From GWAS Catalog for PIR49239 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49239 Gene

Localization for PIR49239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49239 Gene

Pathways & Interactions for PIR49239 Gene

SuperPathways for PIR49239 Gene

No Data Available

Interacting Proteins for PIR49239 Gene

Gene Ontology (GO) - Biological Process for PIR49239 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49239 Gene

Drugs & Compounds for PIR49239 Gene

No Compound Related Data Available

Transcripts for PIR49239 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49239 Gene

No ASD Table

Relevant External Links for PIR49239 Gene

GeneLoc Exon Structure for
PIR49239

No data available for mRNA/cDNA for PIR49239 Gene

Expression for PIR49239 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49239 Gene

Orthologs for PIR49239 Gene

No data available for Orthologs and Evolution for PIR49239 Gene

Paralogs for PIR49239 Gene

No data available for Paralogs for PIR49239 Gene

Variants for PIR49239 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49239 Gene

Disorders for PIR49239 Gene

No disorders were found for PIR49239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49239 Gene

Publications for PIR49239 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49239 Gene

Sources for PIR49239 Gene

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